Basic Information | |
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Species | Aquilegia coerulea |
Cazyme ID | Aquca_020_00127.1 |
Family | GH28 |
Protein Properties | Length: 375 Molecular Weight: 40594.7 Isoelectric Point: 5.5568 |
Chromosome | Chromosome/Scaffold: 20 Start: 1059110 End: 1060998 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 34 | 349 | 0 |
DKACTSWNPSTLVVPSDKSFLLRPVVTFQGPCKAPSIDFQIWGDILAPKSMSAWKKSDDTDHWIVFDLITGLSINGTGKIDGRGSSWWECREKHAIQING CADFQMKGIKIFNSQQMHVAIDSCYGVQISDVWIVAPESSPNTDGIHIGSSKNVDISKSTIETGDDCISIGTGTSNVTISDIYCGPGHGISIGSLGKHGP AAVEQIYVYNCTFKGTQNGARIKTWQGGSGYAKDITFEDIILDSSDNPIIIDQYYCNGGDGCKNKTSAVKVSHVWFNNFRGTSSSKTAINLACSETVACE DIHLNHVHIMGVDSKE |
Full Sequence |
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Protein Sequence Length: 375 Download |
MLDDVSSNVL NVMDFGAVGD GKTDDSQAFL KAWDKACTSW NPSTLVVPSD KSFLLRPVVT 60 FQGPCKAPSI DFQIWGDILA PKSMSAWKKS DDTDHWIVFD LITGLSINGT GKIDGRGSSW 120 WECREKHAIQ INGCADFQMK GIKIFNSQQM HVAIDSCYGV QISDVWIVAP ESSPNTDGIH 180 IGSSKNVDIS KSTIETGDDC ISIGTGTSNV TISDIYCGPG HGISIGSLGK HGPAAVEQIY 240 VYNCTFKGTQ NGARIKTWQG GSGYAKDITF EDIILDSSDN PIIIDQYYCN GGDGCKNKTS 300 AVKVSHVWFN NFRGTSSSKT AINLACSETV ACEDIHLNHV HIMGVDSKEV VPYTLNVKGN 360 MLDVKPEPYI KQKT* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 5.0e-89 | 6 | 364 | 369 | + polygalacturonase | ||
PLN02218 | PLN02218 | 3.0e-95 | 6 | 344 | 353 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-108 | 6 | 373 | 388 | + Probable polygalacturonase | ||
PLN03010 | PLN03010 | 3.0e-110 | 5 | 342 | 340 | + polygalacturonase | ||
PLN03003 | PLN03003 | 5.0e-112 | 6 | 342 | 343 | + Probable polygalacturonase At3g15720 |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI36306.1 | 0 | 7 | 359 | 121 | 481 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002266797.1 | 0 | 7 | 359 | 15 | 360 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002266960.1 | 0 | 1 | 366 | 11 | 384 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002515526.1 | 0 | 1 | 366 | 19 | 387 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-22 | 45 | 288 | 57 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 4e-20 | 25 | 344 | 7 | 321 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 4e-20 | 25 | 344 | 7 | 321 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 4e-20 | 25 | 344 | 7 | 321 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 4e-20 | 25 | 344 | 7 | 321 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DR923380 | 241 | 27 | 260 | 0 |
DR923379 | 211 | 157 | 366 | 0 |
DT731103 | 211 | 157 | 366 | 0 |
DR923380 | 31 | 256 | 286 | 0.005 |
DR923380 | 12 | 287 | 298 | 0.005 |
Sequence Alignments (This image is cropped. Click for full image.) |
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