Basic Information | |
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Species | Aquilegia coerulea |
Cazyme ID | Aquca_020_00129.3 |
Family | GH28 |
Protein Properties | Length: 415 Molecular Weight: 45223.6 Isoelectric Point: 8.0876 |
Chromosome | Chromosome/Scaffold: 20 Start: 1070191 End: 1072691 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 60 | 399 | 0 |
SANIIVPEGMTFVVNPVLFEGPCKPKEINFKIFGTIMSPKPAAWKGIDSTQWLAFRRVSSLTVDGYGTINGQGSSWWSLSCKNNHREACITSAPAAIKFI SCSNTYLRNLQFVDSAQTHIVIKQSEWFHVTNLRIKAPETSPNTDGIHIEDSKHVYIDHSAIGSGDDCISIGDQTSDIRITNILCGPGHGISVGSLGKGG SNVQVKNIHVSHVNFYQTTNGVRIKTWKGATGYARDITFEYLNFTNVQNPIIIDQYYCNKLYPGDCKAVAKSNSGVQLSDVTYKNAIGTSITEVAIRLNC SKSVPCTGILLDSIQLKPALHSHRNEDDQLISSCTNAHGR |
Full Sequence |
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Protein Sequence Length: 415 Download |
MGLLAIIFVI LSCLMVLALS DKTRDINVVD YGAVGDGYTE NSQAFLKAWD VTCSLVFAES 60 ANIIVPEGMT FVVNPVLFEG PCKPKEINFK IFGTIMSPKP AAWKGIDSTQ WLAFRRVSSL 120 TVDGYGTING QGSSWWSLSC KNNHREACIT SAPAAIKFIS CSNTYLRNLQ FVDSAQTHIV 180 IKQSEWFHVT NLRIKAPETS PNTDGIHIED SKHVYIDHSA IGSGDDCISI GDQTSDIRIT 240 NILCGPGHGI SVGSLGKGGS NVQVKNIHVS HVNFYQTTNG VRIKTWKGAT GYARDITFEY 300 LNFTNVQNPI IIDQYYCNKL YPGDCKAVAK SNSGVQLSDV TYKNAIGTSI TEVAIRLNCS 360 KSVPCTGILL DSIQLKPALH SHRNEDDQLI SSCTNAHGRT KGVIKPNIPC LLRK* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 8.0e-92 | 3 | 410 | 419 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03010 | PLN03010 | 4.0e-95 | 27 | 375 | 351 | + polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-97 | 26 | 406 | 384 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 2.0e-105 | 14 | 411 | 399 | + Probable polygalacturonase At3g15720 | ||
PLN02793 | PLN02793 | 5.0e-120 | 2 | 411 | 428 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD55472.1 | 0 | 29 | 406 | 1 | 377 | AC009322_12 Similar to polygalacturonases [Arabidopsis thaliana] |
GenBank | ABM67700.1 | 0 | 20 | 411 | 49 | 425 | polygalacturonase [Citrus sinensis] |
EMBL | CBI36307.1 | 0 | 1 | 411 | 1 | 402 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002266543.1 | 0 | 27 | 411 | 21 | 374 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002266960.1 | 0 | 17 | 412 | 11 | 390 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 9e-24 | 124 | 375 | 115 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 2e-16 | 128 | 348 | 80 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-16 | 128 | 348 | 80 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-16 | 128 | 348 | 80 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-16 | 128 | 348 | 80 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |