Basic Information | |
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Species | Aquilegia coerulea |
Cazyme ID | Aquca_020_00129.4 |
Family | GH28 |
Protein Properties | Length: 320 Molecular Weight: 34907.5 Isoelectric Point: 8.7291 |
Chromosome | Chromosome/Scaffold: 20 Start: 1070191 End: 1072691 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 11 | 304 | 0 |
IDSTQWLAFRRVSSLTVDGYGTINGQGSSWWSLSCKNNHREACITSAPAAIKFISCSNTYLRNLQFVDSAQTHIVIKQSEWFHVTNLRIKAPETSPNTDG IHIEDSKHVYIDHSAIGSGDDCISIGDQTSDIRITNILCGPGHGISVGSLGKGGSNVQVKNIHVSHVNFYQTTNGVRIKTWKGATGYARDITFEYLNFTN VQNPIIIDQYYCNKLYPGDCKAVAKSNSGVQLSDVTYKNAIGTSITEVAIRLNCSKSVPCTGILLDSIQLKPALHSHRNEDDQLISSCTNAHGR |
Full Sequence |
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Protein Sequence Length: 320 Download |
MSPKPAAWKG IDSTQWLAFR RVSSLTVDGY GTINGQGSSW WSLSCKNNHR EACITSAPAA 60 IKFISCSNTY LRNLQFVDSA QTHIVIKQSE WFHVTNLRIK APETSPNTDG IHIEDSKHVY 120 IDHSAIGSGD DCISIGDQTS DIRITNILCG PGHGISVGSL GKGGSNVQVK NIHVSHVNFY 180 QTTNGVRIKT WKGATGYARD ITFEYLNFTN VQNPIIIDQY YCNKLYPGDC KAVAKSNSGV 240 QLSDVTYKNA IGTSITEVAI RLNCSKSVPC TGILLDSIQL KPALHSHRNE DDQLISSCTN 300 AHGRTKGVIK PNIPCLLRK* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 4.0e-77 | 13 | 315 | 306 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 3.0e-77 | 12 | 311 | 302 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 3.0e-78 | 4 | 280 | 277 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 5.0e-81 | 1 | 316 | 317 | + Probable polygalacturonase At3g15720 | ||
PLN02793 | PLN02793 | 1.0e-95 | 1 | 316 | 317 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD55472.1 | 0 | 16 | 311 | 85 | 377 | AC009322_12 Similar to polygalacturonases [Arabidopsis thaliana] |
RefSeq | NP_178131.1 | 0 | 16 | 311 | 55 | 332 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_565232.1 | 0 | 5 | 316 | 125 | 424 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002463688.1 | 0 | 2 | 319 | 131 | 436 | hypothetical protein SORBIDRAFT_01g004230 [Sorghum bicolor] |
RefSeq | XP_002466241.1 | 0 | 2 | 315 | 130 | 431 | hypothetical protein SORBIDRAFT_01g004190 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-24 | 29 | 280 | 115 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 8e-17 | 33 | 253 | 80 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 8e-17 | 33 | 253 | 80 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 8e-17 | 33 | 253 | 80 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 8e-17 | 33 | 253 | 80 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DT769246 | 269 | 52 | 320 | 0 |
DT746124 | 255 | 66 | 320 | 0 |
DT768232 | 252 | 69 | 320 | 0 |
DT763198 | 227 | 128 | 320 | 0 |
DT746124 | 20 | 46 | 65 | 1.4 |
Sequence Alignments (This image is cropped. Click for full image.) |
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