Basic Information | |
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Species | Aquilegia coerulea |
Cazyme ID | Aquca_020_00130.1 |
Family | GH28 |
Protein Properties | Length: 383 Molecular Weight: 41078.9 Isoelectric Point: 5.1429 |
Chromosome | Chromosome/Scaffold: 20 Start: 1073684 End: 1083052 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 46 | 370 | 0 |
ICESEEVSPRLIIPAGKTFLLNPVHFQGPCKAPNVRVSVEGNIIAPEMSKWNNGDESRWLGFFNVNGLIVTGSGQVDGNGQSWWGCAGKSTIVFHNCHNL QLRGLTFIDSPKNHISINDVHGATISNLHITAPEDSENTDGIDISESTNIEIRDLIIGTGDDCIAINGQSSFINITNVACGPGHGISVGSLGAHGAYDTV EEVHVKNCNFTNTQNGVRIKTWQGGSGYARKISFEQIFLDSVKNPVIIDQYYCTGGHCDTHAHQNVKISDVTYSGVHGSSRKTAAISLNCSRSVACTDIV MNDVKIDSVDPGIKTYSFCINAHGT |
Full Sequence |
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Protein Sequence Length: 383 Download |
MYGFFTVFMF LCLVRSGMSN SVLDYGAVGD GETDDSQAFL KAWDSICESE EVSPRLIIPA 60 GKTFLLNPVH FQGPCKAPNV RVSVEGNIIA PEMSKWNNGD ESRWLGFFNV NGLIVTGSGQ 120 VDGNGQSWWG CAGKSTIVFH NCHNLQLRGL TFIDSPKNHI SINDVHGATI SNLHITAPED 180 SENTDGIDIS ESTNIEIRDL IIGTGDDCIA INGQSSFINI TNVACGPGHG ISVGSLGAHG 240 AYDTVEEVHV KNCNFTNTQN GVRIKTWQGG SGYARKISFE QIFLDSVKNP VIIDQYYCTG 300 GHCDTHAHQN VKISDVTYSG VHGSSRKTAA ISLNCSRSVA CTDIVMNDVK IDSVDPGIKT 360 YSFCINAHGT SDSTSPDVPC LA* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
PLN02218 | PLN02218 | 2.0e-83 | 14 | 351 | 351 | + polygalacturonase ADPG |
pfam00295 | Glyco_hydro_28 | 7.0e-84 | 56 | 368 | 322 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
PLN02793 | PLN02793 | 1.0e-104 | 22 | 382 | 378 | + Probable polygalacturonase |
PLN03003 | PLN03003 | 6.0e-119 | 5 | 382 | 385 | + Probable polygalacturonase At3g15720 |
PLN03010 | PLN03010 | 2.0e-121 | 10 | 374 | 367 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI36306.1 | 0 | 7 | 381 | 101 | 493 | unnamed protein product [Vitis vinifera] |
EMBL | CBI36306.1 | 0.000003 | 311 | 378 | 24 | 90 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002266797.1 | 0 | 22 | 381 | 20 | 372 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002324855.1 | 0 | 1 | 382 | 1 | 395 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515526.1 | 0 | 22 | 382 | 30 | 393 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 8e-21 | 121 | 366 | 80 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 8e-21 | 121 | 366 | 80 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 8e-21 | 121 | 366 | 80 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 8e-21 | 121 | 366 | 80 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 8e-21 | 121 | 366 | 80 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |