Basic Information | |
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Species | Aquilegia coerulea |
Cazyme ID | Aquca_020_00507.1 |
Family | GH28 |
Protein Properties | Length: 487 Molecular Weight: 54352.3 Isoelectric Point: 8.6353 |
Chromosome | Chromosome/Scaffold: 20 Start: 3522576 End: 3526352 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 101 | 447 | 0 |
GGGQLNVPPGNWLTAPFNLTSHMTLFLSEGAVILAVQDEAYWTLMAPLPSYGYGREHPGPRYGSLIHGQHLKDIEITGHNGTIDGQGQTWWIKHRQKLLN YTRGPLLQIMWSSDIRISNITLRDSPFWNIHPYDCKNITIRNVTILAPLHGAPNTDGIDPDSCENMVIEDCYISVGDDGIAIKSGWDQYGIAYAQPSTNI LIRNLVVQSMVSAGISIGSEMSGGVSNVKVENVLVWNSRRGMRIKTAPGRGGYIRHITYQNVTFDNVRVGIVIKTDYNEHPDEGYDPKAFPILGNISFIG IHGQGVRVPVRLHGSEDIPLRNLKFQDMSVGTTYKKKHIFQCAFVQG |
Full Sequence |
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Protein Sequence Length: 487 Download |
MVEYITFGRL IHQRIPTLVS THRTFLTILW IVGFASLFVW QRNNFVDGFW MFNPVSNKVI 60 PKLRPIVFNL TDFGGKGDGI TLNTEAFEKA VAVIAKLRLK GGGQLNVPPG NWLTAPFNLT 120 SHMTLFLSEG AVILAVQDEA YWTLMAPLPS YGYGREHPGP RYGSLIHGQH LKDIEITGHN 180 GTIDGQGQTW WIKHRQKLLN YTRGPLLQIM WSSDIRISNI TLRDSPFWNI HPYDCKNITI 240 RNVTILAPLH GAPNTDGIDP DSCENMVIED CYISVGDDGI AIKSGWDQYG IAYAQPSTNI 300 LIRNLVVQSM VSAGISIGSE MSGGVSNVKV ENVLVWNSRR GMRIKTAPGR GGYIRHITYQ 360 NVTFDNVRVG IVIKTDYNEH PDEGYDPKAF PILGNISFIG IHGQGVRVPV RLHGSEDIPL 420 RNLKFQDMSV GTTYKKKHIF QCAFVQGRVI GTIFPAPCEN LDLYNEQGQL VKRSSSQNVT 480 DIDYTL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 1.0e-26 | 68 | 447 | 394 | + polygalacturonase | ||
PLN03003 | PLN03003 | 5.0e-34 | 68 | 432 | 384 | + Probable polygalacturonase At3g15720 | ||
PLN02793 | PLN02793 | 7.0e-35 | 26 | 458 | 448 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-38 | 166 | 437 | 278 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 4.0e-65 | 67 | 388 | 345 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN69988.1 | 0 | 1 | 484 | 1 | 507 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002277239.1 | 0 | 1 | 484 | 1 | 491 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002324728.1 | 0 | 1 | 484 | 9 | 493 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002326133.1 | 0 | 7 | 484 | 15 | 493 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516244.1 | 0 | 1 | 484 | 2 | 492 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 61 | 427 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 61 | 427 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 61 | 427 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 61 | 427 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 1e-19 | 112 | 430 | 52 | 366 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |