Basic Information | |
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Species | Aquilegia coerulea |
Cazyme ID | Aquca_023_00144.1 |
Family | GH28 |
Protein Properties | Length: 393 Molecular Weight: 42207 Isoelectric Point: 8.7564 |
Chromosome | Chromosome/Scaffold: 23 Start: 3117137 End: 3118934 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 51 | 381 | 0 |
TSACNSDYSATIHVPRGRYLLNNIVFNGQDCKNYEITFQIEGTLVAPSDYNIIGKSQDWIKFKDVNGVKIYGGTLDGRGTGLWTCKLASKGCPHGATSLK IGNSKNVVIQGLSSVNSQKFHIVIHESENVYLQGMTITASGNSPNTDGIHVEASKGVTITEADIGTGDDCISIGPGTKNLWIEHINCGPGHGISIGSLGK VFNENGVQNVTVKTVAFTGTQNGLRIKTWARPSKGFVRHVLFENATMINVENPVIIDQNYCPGRQNCPNQVSGVKISDVTYRGVRGSSATEFAVKFDCSS KKPCSGIILDKVHLTYGKKPARSSCASVDGS |
Full Sequence |
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Protein Sequence Length: 393 Download |
MEKITMISVV FLLLVLFFSS SKASIEYNVL KLGAKSNGKT DSTKAFLQAW TSACNSDYSA 60 TIHVPRGRYL LNNIVFNGQD CKNYEITFQI EGTLVAPSDY NIIGKSQDWI KFKDVNGVKI 120 YGGTLDGRGT GLWTCKLASK GCPHGATSLK IGNSKNVVIQ GLSSVNSQKF HIVIHESENV 180 YLQGMTITAS GNSPNTDGIH VEASKGVTIT EADIGTGDDC ISIGPGTKNL WIEHINCGPG 240 HGISIGSLGK VFNENGVQNV TVKTVAFTGT QNGLRIKTWA RPSKGFVRHV LFENATMINV 300 ENPVIIDQNY CPGRQNCPNQ VSGVKISDVT YRGVRGSSAT EFAVKFDCSS KKPCSGIILD 360 KVHLTYGKKP ARSSCASVDG STYNEVQPSS CL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 8.0e-85 | 54 | 371 | 324 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 3.0e-87 | 28 | 368 | 351 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 5.0e-92 | 29 | 392 | 371 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 1.0e-105 | 23 | 391 | 376 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 2.0e-135 | 23 | 392 | 371 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD33834.1 | 0 | 5 | 392 | 6 | 393 | polygalacturonase [Prunus domestica subsp. insititia] |
RefSeq | XP_002263164.1 | 0 | 4 | 392 | 10 | 393 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002275367.1 | 0 | 4 | 392 | 10 | 393 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002529090.1 | 0 | 7 | 392 | 9 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529091.1 | 0 | 12 | 392 | 12 | 392 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-24 | 120 | 365 | 113 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 2e-17 | 110 | 375 | 63 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-17 | 110 | 375 | 63 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-17 | 110 | 375 | 63 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-17 | 110 | 375 | 63 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |