y
Basic Information | |
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Species | Aquilegia coerulea |
Cazyme ID | Aquca_023_00190.1 |
Family | PL4 |
Protein Properties | Length: 480 Molecular Weight: 54649.2 Isoelectric Point: 7.215 |
Chromosome | Chromosome/Scaffold: 23 Start: 3713794 End: 3716325 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 20 | 456 | 0 |
DRSETLAYVEAVRFTNPIEQEFRGKVDDKYQFSCNSEDIKVHGWMSTNPSVGFWQITPSHEYRSGGPLKQQLTSHVGPTSLSVFISGHYMGDRTPQFRNG EPWKKVFGPVFIYLNSGSTGTNTSALWSDANIQMKKEMQSWPYSFPVSDDFPKSKQRGSVYGRLLVRDRYINILDFLPGGSAYVGLAPPGEVGSWQTEGK GYQFWTLSSTNGVFAINNIRPGIYNLYASVPGFIGEYKSDKIITIRPGENTDLRDVIYFPPRNGPTLWEIGYPDRSAAEFFIPDPDSQYLNPILTYHDRF RQYGLWDMYSNIYPNEDLVYTIHTSDYRKDWFFAHATRKTKQNFYEATTWQIKFNLSNVGQSTTYKLRLALAAASQAELLVRFNSLNIHHPHFRTGMTGR DNAIARHGIHGIYWLFNVDAKSEWLVEGENTIYLTQA |
Full Sequence |
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Protein Sequence Length: 480 Download |
MAVDQTRQGH MPLPDDRMAD RSETLAYVEA VRFTNPIEQE FRGKVDDKYQ FSCNSEDIKV 60 HGWMSTNPSV GFWQITPSHE YRSGGPLKQQ LTSHVGPTSL SVFISGHYMG DRTPQFRNGE 120 PWKKVFGPVF IYLNSGSTGT NTSALWSDAN IQMKKEMQSW PYSFPVSDDF PKSKQRGSVY 180 GRLLVRDRYI NILDFLPGGS AYVGLAPPGE VGSWQTEGKG YQFWTLSSTN GVFAINNIRP 240 GIYNLYASVP GFIGEYKSDK IITIRPGENT DLRDVIYFPP RNGPTLWEIG YPDRSAAEFF 300 IPDPDSQYLN PILTYHDRFR QYGLWDMYSN IYPNEDLVYT IHTSDYRKDW FFAHATRKTK 360 QNFYEATTWQ IKFNLSNVGQ STTYKLRLAL AAASQAELLV RFNSLNIHHP HFRTGMTGRD 420 NAIARHGIHG IYWLFNVDAK SEWLVEGENT IYLTQATPGS PFAGLMYDYI RFEGPSNGS* 480 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13620 | CarboxypepD_reg | 0.0003 | 215 | 272 | 58 | + Carboxypeptidase regulatory-like domain. | ||
pfam06045 | Rhamnogal_lyase | 1.0e-8 | 1 | 45 | 45 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
cd10316 | RGL4_M | 4.0e-27 | 175 | 274 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 2.0e-32 | 10 | 138 | 130 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 6.0e-38 | 287 | 473 | 189 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_172460.6 | 0 | 1 | 476 | 140 | 617 | lyase [Arabidopsis thaliana] |
RefSeq | XP_002285626.1 | 0 | 1 | 475 | 140 | 615 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002285627.1 | 0 | 1 | 475 | 22 | 497 | PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] |
RefSeq | XP_002527352.1 | 0 | 1 | 476 | 156 | 632 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527353.1 | 0 | 1 | 475 | 159 | 633 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GW864372 | 300 | 1 | 299 | 0 |
DY922281 | 273 | 115 | 385 | 0 |
EH722500 | 265 | 22 | 285 | 0 |
DY969340 | 313 | 75 | 384 | 0 |
CO474992 | 285 | 83 | 366 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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