y
Basic Information | |
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Species | Aquilegia coerulea |
Cazyme ID | Aquca_025_00355.1 |
Family | GH28 |
Protein Properties | Length: 514 Molecular Weight: 55986 Isoelectric Point: 8.6113 |
Chromosome | Chromosome/Scaffold: 25 Start: 3006381 End: 3011671 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 121 | 466 | 0 |
AAACKVEASTILVPSDYMFLVGPISFSGPYCKPNIVFQLDGTIIAPAGFKVWGSGLFQWLLFTKLTGITIQGGGVIDGRGSIWWKELPLDDPIDDETKML VPKNNISADQKSLTPINSQLSGKMPDIKPTALRFYGSFNVKVTGITIINSPQCHLKFDNCVGVNVFDMSVSSPGDSLNTDGIHLQNSRDVLIRGTNIACG DDCISIQTGSSNVYIHDVTCGPGHGISIGGLGKDNTKACVSNITVRDIMMHNTMNGVRIKTWQGGSGSVENVLFSNIQVSEVEFPIVIDQFYCDKRTCKN QTSAVFLSGITYERIRGTYTVKPVHFACSDSLPCMDVSLTSIQLKP |
Full Sequence |
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Protein Sequence Length: 514 Download |
MSSFSLKSFT FILLIAILVW SSTIEPCSAR RGKHWRRNRV VSDSLSKKKG KNHGSKHHYN 60 HGGSGKPKPP PPLYTGPKKK NPSPPAKGDN SGNSAIFNVL EFGAKGDGNV DDTKAFQAAW 120 AAACKVEAST ILVPSDYMFL VGPISFSGPY CKPNIVFQLD GTIIAPAGFK VWGSGLFQWL 180 LFTKLTGITI QGGGVIDGRG SIWWKELPLD DPIDDETKML VPKNNISADQ KSLTPINSQL 240 SGKMPDIKPT ALRFYGSFNV KVTGITIINS PQCHLKFDNC VGVNVFDMSV SSPGDSLNTD 300 GIHLQNSRDV LIRGTNIACG DDCISIQTGS SNVYIHDVTC GPGHGISIGG LGKDNTKACV 360 SNITVRDIMM HNTMNGVRIK TWQGGSGSVE NVLFSNIQVS EVEFPIVIDQ FYCDKRTCKN 420 QTSAVFLSGI TYERIRGTYT VKPVHFACSD SLPCMDVSLT SIQLKPLQER YHLYDPFCWQ 480 TFGELRTPTV PPIDCLRIGK PASNRIQSDH DSC* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 1.0e-61 | 93 | 465 | 378 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03010 | PLN03010 | 3.0e-62 | 93 | 464 | 377 | + polygalacturonase | ||
PLN02218 | PLN02218 | 6.0e-69 | 98 | 465 | 372 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 8.0e-71 | 128 | 464 | 338 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 5.0e-91 | 96 | 492 | 401 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK95830.1 | 0 | 1 | 513 | 4 | 516 | unknown [Populus trichocarpa] |
EMBL | CAN65317.1 | 0 | 128 | 513 | 4 | 388 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002266600.1 | 0 | 1 | 513 | 1 | 505 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311773.1 | 0 | 1 | 513 | 4 | 517 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525361.1 | 0 | 1 | 513 | 1 | 519 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-22 | 173 | 416 | 96 | 318 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 3e-21 | 253 | 438 | 101 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 3e-21 | 253 | 438 | 101 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 3e-21 | 253 | 438 | 101 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 3e-21 | 253 | 438 | 101 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |