y
Basic Information | |
---|---|
Species | Aquilegia coerulea |
Cazyme ID | Aquca_025_00355.2 |
Family | GH28 |
Protein Properties | Length: 377 Molecular Weight: 41211.2 Isoelectric Point: 6.8886 |
Chromosome | Chromosome/Scaffold: 25 Start: 3006381 End: 3010210 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 4 | 329 | 0 |
VGPISFSGPYCKPNIVFQLDGTIIAPAGFKVWGSGLFQWLLFTKLTGITIQGGGVIDGRGSIWWKELPLDDPIDDETKMLVPKNNISADQKSLTPINSQL SGKMPDIKPTALRFYGSFNVKVTGITIINSPQCHLKFDNCVGVNVFDMSVSSPGDSLNTDGIHLQNSRDVLIRGTNIACGDDCISIQTGSSNVYIHDVTC GPGHGISIGGLGKDNTKACVSNITVRDIMMHNTMNGVRIKTWQGGSGSVENVLFSNIQVSEVEFPIVIDQFYCDKRTCKNQTSAVFLSGITYERIRGTYT VKPVHFACSDSLPCMDVSLTSIQLKP |
Full Sequence |
---|
Protein Sequence Length: 377 Download |
MFLVGPISFS GPYCKPNIVF QLDGTIIAPA GFKVWGSGLF QWLLFTKLTG ITIQGGGVID 60 GRGSIWWKEL PLDDPIDDET KMLVPKNNIS ADQKSLTPIN SQLSGKMPDI KPTALRFYGS 120 FNVKVTGITI INSPQCHLKF DNCVGVNVFD MSVSSPGDSL NTDGIHLQNS RDVLIRGTNI 180 ACGDDCISIQ TGSSNVYIHD VTCGPGHGIS IGGLGKDNTK ACVSNITVRD IMMHNTMNGV 240 RIKTWQGGSG SVENVLFSNI QVSEVEFPIV IDQFYCDKRT CKNQTSAVFL SGITYERIRG 300 TYTVKPVHFA CSDSLPCMDV SLTSIQLKPL QERYHLYDPF CWQTFGELRT PTVPPIDCLR 360 IGKPASNRIQ SDHDSC* 420 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 4.0e-53 | 2 | 376 | 381 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 4.0e-54 | 2 | 328 | 332 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 2.0e-61 | 2 | 328 | 330 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 6.0e-71 | 2 | 327 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 3.0e-81 | 2 | 355 | 357 | + Probable polygalacturonase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK95830.1 | 0 | 1 | 376 | 142 | 516 | unknown [Populus trichocarpa] |
EMBL | CAN65317.1 | 0 | 1 | 376 | 14 | 388 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002266600.1 | 0 | 1 | 376 | 131 | 505 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311773.1 | 0 | 1 | 376 | 143 | 517 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002314612.1 | 0 | 1 | 376 | 8 | 382 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-23 | 36 | 279 | 96 | 318 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 1e-21 | 106 | 301 | 91 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 1e-21 | 106 | 301 | 91 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 1e-21 | 106 | 301 | 91 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 1e-21 | 106 | 301 | 91 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
DR918952 | 259 | 119 | 377 | 0 |
ES800057 | 350 | 1 | 349 | 0 |
FE695613 | 287 | 65 | 351 | 0 |
DW141437 | 288 | 41 | 328 | 0 |
DT756284 | 218 | 160 | 377 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|