y
Basic Information | |
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Species | Aquilegia coerulea |
Cazyme ID | Aquca_029_00086.1 |
Family | GH28 |
Protein Properties | Length: 464 Molecular Weight: 50267.7 Isoelectric Point: 4.536 |
Chromosome | Chromosome/Scaffold: 29 Start: 2020183 End: 2022646 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 93 | 420 | 0 |
KAACAVDSGVLLAPADYTFTITSTVFSGPCKPGLVFQVDGVLMPPDGPDCWPKSDSVKQWLVFYRVSGMTLTGSGTIEGNGGQWWELPCKPHRGPHGSTL PGPCESPTLVRFFMSSKLVISGLRIQNSPQMHIKFDGCNEVRIEKLSIFSPALSPNTDGIHIENTKSVGIYNSVISNGDDCISIGTGCSDVDIENVICGP SHGISIGSLGVQNSQACVSNIAVKNVVIKNSDNGVRIKTWQGGMGSVSDISFENIQMENVKNCIILDQYYCLMKNCRNQTSAVHATNISYKNIKGTYDVR TPPIHFACSDTVPCTNITLSEVELLPEQ |
Full Sequence |
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Protein Sequence Length: 464 Download |
MNLVRCICFI WIAMAINFSV YFSNVEGRYH YHKSPKKDSS SNYVSKPPAY APSNSPAGPS 60 DQVEDQCTFD VTDFGAVGDG STDDTDAFMS AWKAACAVDS GVLLAPADYT FTITSTVFSG 120 PCKPGLVFQV DGVLMPPDGP DCWPKSDSVK QWLVFYRVSG MTLTGSGTIE GNGGQWWELP 180 CKPHRGPHGS TLPGPCESPT LVRFFMSSKL VISGLRIQNS PQMHIKFDGC NEVRIEKLSI 240 FSPALSPNTD GIHIENTKSV GIYNSVISNG DDCISIGTGC SDVDIENVIC GPSHGISIGS 300 LGVQNSQACV SNIAVKNVVI KNSDNGVRIK TWQGGMGSVS DISFENIQME NVKNCIILDQ 360 YYCLMKNCRN QTSAVHATNI SYKNIKGTYD VRTPPIHFAC SDTVPCTNIT LSEVELLPEQ 420 GELVDDPFCW NAYGTQETLT IPPIDCLQDG EPETLTESVN YEC* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 4.0e-78 | 69 | 448 | 387 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 2.0e-80 | 68 | 443 | 380 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 1.0e-86 | 102 | 416 | 315 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 8.0e-96 | 63 | 416 | 360 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 3.0e-120 | 69 | 451 | 386 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI25976.1 | 0 | 89 | 463 | 1 | 375 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_175244.1 | 0 | 1 | 463 | 1 | 475 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002263668.1 | 0 | 23 | 463 | 22 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312305.1 | 0 | 1 | 463 | 1 | 482 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002519290.1 | 0 | 1 | 463 | 1 | 479 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rmg_A | 1e-22 | 68 | 435 | 20 | 356 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1nhc_F | 7e-21 | 161 | 416 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 7e-21 | 161 | 416 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 7e-21 | 161 | 416 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 7e-21 | 161 | 416 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |