Basic Information | |
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Species | Aquilegia coerulea |
Cazyme ID | Aquca_030_00036.1 |
Family | PL1 |
Protein Properties | Length: 504 Molecular Weight: 54464.2 Isoelectric Point: 6.1876 |
Chromosome | Chromosome/Scaffold: 30 Start: 250590 End: 253552 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 142 | 341 | 0 |
IIFSGDMLVTLKEELIVNSYKTMDGRGANVHIVGGGCITLQYVSNIIIHNIHIHHCVPSPVSNVRSSPTHYGRRTKSDGDGISIFGGSKIWIDHCSLSYC KDGLIDAIMGSTGITISNNYFSHHDEVMLLGHSDDFEPDSGMQVTIAFNHFGEALIQRMPRCRRGYIHVVNNDFTQWEMYAIGGSANPTINSQGNRYTAP |
Full Sequence |
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Protein Sequence Length: 504 Download |
MQRLLLNICI CLLTFFSPII QATHFNLTLL HQHPYPESVV QEVQRRVNVS VSRREMLGVF 60 EKGQSSSCLS GNPIDDCWRC DSTNWANNRQ RLADCAIGFG EDALGGKGGQ IYTVTDSSDH 120 DPVNPTPGTL RYAVVQTEPL WIIFSGDMLV TLKEELIVNS YKTMDGRGAN VHIVGGGCIT 180 LQYVSNIIIH NIHIHHCVPS PVSNVRSSPT HYGRRTKSDG DGISIFGGSK IWIDHCSLSY 240 CKDGLIDAIM GSTGITISNN YFSHHDEVML LGHSDDFEPD SGMQVTIAFN HFGEALIQRM 300 PRCRRGYIHV VNNDFTQWEM YAIGGSANPT INSQGNRYTA PSNLNAKEVT KRVETADGEW 360 ANWDWRSDGD EMVNGAFFVP SGGGAGAKYA RESSVEPKSQ PKSAGMIDRL TMNAGVMGGN 420 RDNDMSMGNS GFSDGSSSSG GGGGGGGGSG GGERGTDFFG MIFASSARPT LIVSSFSIVL 480 CCLLLNLYIL TTSSSTQLDP LKL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 3.0e-19 | 232 | 336 | 116 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 6.0e-49 | 153 | 338 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-57 | 147 | 342 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002265853.1 | 0 | 26 | 423 | 139 | 531 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002268818.1 | 0 | 20 | 467 | 20 | 459 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002316399.1 | 0 | 8 | 421 | 9 | 415 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002519460.1 | 0 | 25 | 493 | 24 | 481 | Pectate lyase precursor, putative [Ricinus communis] |
RefSeq | XP_002534016.1 | 0 | 5 | 470 | 9 | 463 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 72 | 417 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 72 | 417 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-20 | 92 | 338 | 2 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_B | 0.000000000000005 | 153 | 415 | 80 | 357 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_A | 0.000000000000005 | 153 | 415 | 80 | 357 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |