Basic Information | |
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Species | Aquilegia coerulea |
Cazyme ID | Aquca_034_00209.3 |
Family | PL1 |
Protein Properties | Length: 403 Molecular Weight: 44446 Isoelectric Point: 7.5948 |
Chromosome | Chromosome/Scaffold: 34 Start: 1466205 End: 1470407 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 115 | 320 | 0 |
VIQNEPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIANGACITVQFVTNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWV DHNSLSNCADGLVDAVMGSTAITVSNNHFAHHNEVMLLGHSDSYTKDKGMQVTIAYNHFGAGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTINS QGNRYL |
Full Sequence |
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Protein Sequence Length: 403 Download |
MVVLFNCRYE EVEDGGRNEH AVDDPEEIAS MVEMTIRNNT ERRKLGFLSC GTGNPIDDCW 60 RCDRNWHRNR KRLADCGIGF GRNAIGGRDG RFYVVTDPGD DDPVNPRPGT LRHAVIQNEP 120 LWIVFKRDMV ITLKQELIMN SFKTIDGRGV NVHIANGACI TVQFVTNVII HGLHIHDCKP 180 TGNAMVRSSP SHYGWRTMAD GDAISIFGSS HIWVDHNSLS NCADGLVDAV MGSTAITVSN 240 NHFAHHNEVM LLGHSDSYTK DKGMQVTIAY NHFGAGLIQR MPRCRHGYFH VVNNDYTHWE 300 MYAIGGSASP TINSQGNRYL APVNPFAKEV TKRVDTDARQ WKGWNWRSEG DMLLNGAYFT 360 SSGALSSASY SMASSLGAKS SSMVASITSG AGVLSCRRGN QC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 6.0e-28 | 141 | 317 | 189 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 6.0e-71 | 134 | 319 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 5.0e-80 | 128 | 322 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ADD62392.1 | 0 | 13 | 402 | 56 | 445 | pectase lyase [Prunus persica] |
DDBJ | BAF43573.1 | 0 | 13 | 402 | 36 | 425 | pectate lyase [Prunus persica] |
EMBL | CBI33346.1 | 0 | 17 | 402 | 45 | 430 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002285639.1 | 0 | 17 | 402 | 47 | 432 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002297822.1 | 0 | 8 | 402 | 56 | 450 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 54 | 395 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 54 | 395 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 9e-18 | 123 | 320 | 50 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.00000000000003 | 144 | 319 | 135 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pe9_B | 0.0000000000002 | 144 | 392 | 90 | 357 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO778688 | 396 | 8 | 403 | 0 |
CK262438 | 296 | 65 | 360 | 0 |
DY304505 | 336 | 8 | 343 | 0 |
FG606120 | 339 | 22 | 360 | 0 |
EL457552 | 295 | 44 | 338 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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