Basic Information | |
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Species | Aquilegia coerulea |
Cazyme ID | Aquca_035_00221.1 |
Family | GH28 |
Protein Properties | Length: 392 Molecular Weight: 41636 Isoelectric Point: 9.1736 |
Chromosome | Chromosome/Scaffold: 35 Start: 2026872 End: 2028349 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 51 | 380 | 0 |
NGACGSVNSAAIYVPSGRYLIKNLLFNGPCKNTNIIIRINGTLVAPTNYNVIGNSENWIAFQWVTGVSIYGGTLDGKGIALWACKLAKKKCPEGATSLSF TNSKDIVINGLKSLNSQMFHIVINGCENVYMKGLMITASGNSPNTDGIHVQLSTGVTIMSSGIKTGDDCISIGPGTRNLWIEHIACGPGHGISIGSLAKD LDEQGVQNVTVKTVVFTGTQNGMRIKAWGRPSRGFVKGVLFQHAVMKNVQNPLVIDQNYCPRNEGCPNQVSGIKISQITYQDIQGTSATQVAVKFDCSTK NPCQGIKLENVKLTYQNQPAVSMCANADGS |
Full Sequence |
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Protein Sequence Length: 392 Download |
MLKTKVSIVL SILFVITDLT LAATTVFNVV KLGAKPDGKT DSTKAFVKAW NGACGSVNSA 60 AIYVPSGRYL IKNLLFNGPC KNTNIIIRIN GTLVAPTNYN VIGNSENWIA FQWVTGVSIY 120 GGTLDGKGIA LWACKLAKKK CPEGATSLSF TNSKDIVING LKSLNSQMFH IVINGCENVY 180 MKGLMITASG NSPNTDGIHV QLSTGVTIMS SGIKTGDDCI SIGPGTRNLW IEHIACGPGH 240 GISIGSLAKD LDEQGVQNVT VKTVVFTGTQ NGMRIKAWGR PSRGFVKGVL FQHAVMKNVQ 300 NPLVIDQNYC PRNEGCPNQV SGIKISQITY QDIQGTSATQ VAVKFDCSTK NPCQGIKLEN 360 VKLTYQNQPA VSMCANADGS AHGIVEPAGC F* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 5.0e-80 | 54 | 377 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 4.0e-84 | 20 | 387 | 375 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 8.0e-90 | 26 | 391 | 374 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 5.0e-102 | 22 | 390 | 378 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 4.0e-152 | 4 | 391 | 392 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD33834.1 | 0 | 1 | 391 | 1 | 393 | polygalacturonase [Prunus domestica subsp. insititia] |
GenBank | ABV32553.1 | 0 | 1 | 391 | 1 | 393 | endopolygalacturonase [Prunus persica] |
EMBL | CAH18935.1 | 0 | 6 | 391 | 14 | 398 | polygalacturonase [Pyrus communis] |
RefSeq | XP_002309718.1 | 0 | 8 | 391 | 9 | 392 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529090.1 | 0 | 10 | 391 | 12 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-25 | 115 | 364 | 109 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 0.000000000000002 | 20 | 382 | 14 | 358 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 2iq7_G | 0.0000000000007 | 158 | 364 | 113 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.0000000000007 | 158 | 364 | 113 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.0000000000007 | 158 | 364 | 113 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |