y
Basic Information | |
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Species | Aquilegia coerulea |
Cazyme ID | Aquca_037_00071.1 |
Family | GH28 |
Protein Properties | Length: 426 Molecular Weight: 46388.1 Isoelectric Point: 9.7863 |
Chromosome | Chromosome/Scaffold: 37 Start: 588751 End: 591006 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 81 | 413 | 0 |
QKACSITSATLVVPKNKNYLLKPITFSGPCKSSITLKIYGTIKASTDRSAYNKEYARHWLVFQNVQNLKVEGGGTINGNGKIWWKNSCKINKALPCKGAP TAVTFKKCNNLVVKNIKIQDAQQMHLTFEKCVNVQALNLIVSAPEKSPNTDGIHVTDTQNIQILNSVIGTGDDCISIEDGSQKVQAKNITCGPGHGISIG SLGDDNSKAYVSDVLIDTARLSRTTNGLRIKTWQGGSGMAKNIVFQNVVMNNVKNPIIIDQNYCDKNEQCKEQKSAVQISNVLFKNVKGTSSSDVAITLE CSKTHPCQEIKMQNINLVSVNKGAAKALCQNVN |
Full Sequence |
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Protein Sequence Length: 426 Download |
MGPQRLHLMY FFWLLFLTTT TTTTTANVIR NELITHGADN RLHQVSRLSS SSSSSNVFNV 60 NDFGAKGDGR DDSQAFLKAW QKACSITSAT LVVPKNKNYL LKPITFSGPC KSSITLKIYG 120 TIKASTDRSA YNKEYARHWL VFQNVQNLKV EGGGTINGNG KIWWKNSCKI NKALPCKGAP 180 TAVTFKKCNN LVVKNIKIQD AQQMHLTFEK CVNVQALNLI VSAPEKSPNT DGIHVTDTQN 240 IQILNSVIGT GDDCISIEDG SQKVQAKNIT CGPGHGISIG SLGDDNSKAY VSDVLIDTAR 300 LSRTTNGLRI KTWQGGSGMA KNIVFQNVVM NNVKNPIIID QNYCDKNEQC KEQKSAVQIS 360 NVLFKNVKGT SSSDVAITLE CSKTHPCQEI KMQNINLVSV NKGAAKALCQ NVNLAKIGKI 420 LPSCT* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 3.0e-99 | 58 | 413 | 360 | + polygalacturonase | ||
PLN02188 | PLN02188 | 1.0e-106 | 58 | 425 | 375 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 9.0e-125 | 85 | 412 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 3.0e-148 | 57 | 423 | 369 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 5.0e-157 | 59 | 425 | 371 | + polygalacturonase ADPG |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAK81876.1 | 0 | 46 | 424 | 66 | 443 | polygalacturonase PG1 [Vitis vinifera] |
EMBL | CBI29907.1 | 0 | 44 | 425 | 62 | 442 | unnamed protein product [Vitis vinifera] |
Swiss-Prot | P35336 | 0 | 54 | 424 | 86 | 455 | PGLR_ACTDE RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
RefSeq | XP_002313308.1 | 0 | 53 | 425 | 4 | 376 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002517823.1 | 0 | 47 | 424 | 69 | 446 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 9e-28 | 147 | 399 | 110 | 363 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.000000000000001 | 153 | 412 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.000000000000001 | 153 | 412 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.000000000000001 | 153 | 412 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.000000000000001 | 153 | 412 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |