Basic Information | |
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Species | Aquilegia coerulea |
Cazyme ID | Aquca_037_00120.1 |
Family | GH28 |
Protein Properties | Length: 498 Molecular Weight: 54534.1 Isoelectric Point: 6.6241 |
Chromosome | Chromosome/Scaffold: 37 Start: 1024936 End: 1029286 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 124 | 472 | 0 |
RRGGTILYIPPGVFLTGSFNLTSHMTLYLAKGAVIRATQDTSTWPLIAPLPSYGRGRERPGGRYMSFIHGDGLHDVIITGENGTIDGQGDVWWNMWRQRT LQFTRPNLVEFMNSKNIIISNVIFQNSPFWTLHPVYSSNVVIRYVTILAPADSPNTDGIDPDSSSHVCIEDSYISTGDDLVAVKSGWDEYGIKYGRKSYG ITIRRVTGSSPFAGIAIGSETSGGVENVLAEHINLFNMGLGIHVKTNIGRGGYIKNITISDVYMENARKGIKIAGDVGDHPDENYDPNALPVVHGVTMRN IWGEKVLQPGSIQGLKNSPFTGICFSNIHLHGVEGPATPLWKCSDVSGT |
Full Sequence |
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Protein Sequence Length: 498 Download |
MFVTPLTNHI QVPFPSISFT TNALCEDIGP ETQDKNLSEV LKIFSMFQSI LWVFTIIQFL 60 VLLLLQQQQW FVNGEEIVTC SGIVPMKYRQ DTISITDFGG VGDGHTLNTK AFREAIYRIE 120 HLKRRGGTIL YIPPGVFLTG SFNLTSHMTL YLAKGAVIRA TQDTSTWPLI APLPSYGRGR 180 ERPGGRYMSF IHGDGLHDVI ITGENGTIDG QGDVWWNMWR QRTLQFTRPN LVEFMNSKNI 240 IISNVIFQNS PFWTLHPVYS SNVVIRYVTI LAPADSPNTD GIDPDSSSHV CIEDSYISTG 300 DDLVAVKSGW DEYGIKYGRK SYGITIRRVT GSSPFAGIAI GSETSGGVEN VLAEHINLFN 360 MGLGIHVKTN IGRGGYIKNI TISDVYMENA RKGIKIAGDV GDHPDENYDP NALPVVHGVT 420 MRNIWGEKVL QPGSIQGLKN SPFTGICFSN IHLHGVEGPA TPLWKCSDVS GTASAVSPSP 480 CAQLTSIPGT GTCLNSF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 1.0e-21 | 91 | 396 | 317 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 9.0e-23 | 92 | 482 | 415 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 7.0e-28 | 92 | 461 | 382 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 7.0e-34 | 206 | 474 | 275 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 7.0e-55 | 94 | 423 | 371 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACC91250.1 | 0 | 51 | 497 | 1 | 444 | glycoside hydrolase family 28 protein [Arabidopsis halleri] |
EMBL | CBI34471.1 | 0 | 46 | 493 | 1 | 443 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_194113.1 | 0 | 51 | 497 | 1 | 444 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002304552.1 | 0 | 86 | 497 | 1 | 412 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509949.1 | 0 | 77 | 493 | 26 | 442 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 5.04467e-44 | 93 | 457 | 28 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 5.04467e-44 | 93 | 457 | 28 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 5.04467e-44 | 93 | 457 | 28 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 5.04467e-44 | 93 | 457 | 28 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 3e-20 | 136 | 427 | 51 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |