Basic Information | |
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Species | Aquilegia coerulea |
Cazyme ID | Aquca_037_00120.3 |
Family | GH28 |
Protein Properties | Length: 453 Molecular Weight: 49528.4 Isoelectric Point: 6.9898 |
Chromosome | Chromosome/Scaffold: 37 Start: 1024936 End: 1028643 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 79 | 427 | 0 |
RRGGTILYIPPGVFLTGSFNLTSHMTLYLAKGAVIRATQDTSTWPLIAPLPSYGRGRERPGGRYMSFIHGDGLHDVIITGENGTIDGQGDVWWNMWRQRT LQFTRPNLVEFMNSKNIIISNVIFQNSPFWTLHPVYSSNVVIRYVTILAPADSPNTDGIDPDSSSHVCIEDSYISTGDDLVAVKSGWDEYGIKYGRKSYG ITIRRVTGSSPFAGIAIGSETSGGVENVLAEHINLFNMGLGIHVKTNIGRGGYIKNITISDVYMENARKGIKIAGDVGDHPDENYDPNALPVVHGVTMRN IWGEKVLQPGSIQGLKNSPFTGICFSNIHLHGVEGPATPLWKCSDVSGT |
Full Sequence |
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Protein Sequence Length: 453 Download |
MFQSILWVFT IIQFLVLLLL QQQQWFVNGE EIVTCSGIVP MKYRQDTISI TDFGGVGDGH 60 TLNTKAFREA IYRIEHLKRR GGTILYIPPG VFLTGSFNLT SHMTLYLAKG AVIRATQDTS 120 TWPLIAPLPS YGRGRERPGG RYMSFIHGDG LHDVIITGEN GTIDGQGDVW WNMWRQRTLQ 180 FTRPNLVEFM NSKNIIISNV IFQNSPFWTL HPVYSSNVVI RYVTILAPAD SPNTDGIDPD 240 SSSHVCIEDS YISTGDDLVA VKSGWDEYGI KYGRKSYGIT IRRVTGSSPF AGIAIGSETS 300 GGVENVLAEH INLFNMGLGI HVKTNIGRGG YIKNITISDV YMENARKGIK IAGDVGDHPD 360 ENYDPNALPV VHGVTMRNIW GEKVLQPGSI QGLKNSPFTG ICFSNIHLHG VEGPATPLWK 420 CSDVSGTASA VSPSPCAQLT SIPGTGTCLN SF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 1.0e-21 | 46 | 351 | 317 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 8.0e-23 | 47 | 437 | 415 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 4.0e-28 | 47 | 416 | 382 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 7.0e-34 | 161 | 429 | 275 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 9.0e-55 | 49 | 378 | 371 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACC91250.1 | 0 | 6 | 452 | 1 | 444 | glycoside hydrolase family 28 protein [Arabidopsis halleri] |
EMBL | CBI34471.1 | 0 | 1 | 448 | 1 | 443 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_194113.1 | 0 | 6 | 452 | 1 | 444 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002304552.1 | 0 | 41 | 452 | 1 | 412 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509949.1 | 0 | 32 | 448 | 26 | 442 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 1.96182e-44 | 48 | 412 | 28 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 1.96182e-44 | 48 | 412 | 28 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 1.96182e-44 | 48 | 412 | 28 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 1.96182e-44 | 48 | 412 | 28 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 2e-20 | 91 | 382 | 51 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |