Basic Information | |
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Species | Aquilegia coerulea |
Cazyme ID | Aquca_038_00085.1 |
Family | GH28 |
Protein Properties | Length: 468 Molecular Weight: 50820.7 Isoelectric Point: 4.8409 |
Chromosome | Chromosome/Scaffold: 38 Start: 1066589 End: 1068787 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 72 | 424 | 0 |
SDGGAQLIIPPGKWLTGSFNLTSHFTLYLEKDAVILASQDESEYPLIPALPSYGRGRDASGDGLRYSSFIFGTNLTDVILTGANGTIDGQGSTWWKNYKK DKLKYTRPTLIEIMYSSQIQISSLTLLNSPQWNVHPIYSSDIIIQGLTILAPIDPISPNTDGINPDSCSNVRIEDNYIVSGDDCIAIKSGWDEYGIKVGM PSQHIIIRRLTCISPDSALIALGSEMSGGIQDIRIEDIVAINTESGIRIKTAPGRGGYIKDIYARNVTMQTMKYVFWMIGSYGSHADEGFDPKALPEIKN INYNDMTATNVTMSGNLAGIKDDPFTNICISNVNIEMSSKPKKLQWNCTDIEG |
Full Sequence |
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Protein Sequence Length: 468 Download |
MEMAMVIMLL GLLSMTSVSC RPSYGLTASE YPAMNCRKHS ASLTDYGGVG DGKTSNTKAF 60 KAAIEDLSKF ASDGGAQLII PPGKWLTGSF NLTSHFTLYL EKDAVILASQ DESEYPLIPA 120 LPSYGRGRDA SGDGLRYSSF IFGTNLTDVI LTGANGTIDG QGSTWWKNYK KDKLKYTRPT 180 LIEIMYSSQI QISSLTLLNS PQWNVHPIYS SDIIIQGLTI LAPIDPISPN TDGINPDSCS 240 NVRIEDNYIV SGDDCIAIKS GWDEYGIKVG MPSQHIIIRR LTCISPDSAL IALGSEMSGG 300 IQDIRIEDIV AINTESGIRI KTAPGRGGYI KDIYARNVTM QTMKYVFWMI GSYGSHADEG 360 FDPKALPEIK NINYNDMTAT NVTMSGNLAG IKDDPFTNIC ISNVNIEMSS KPKKLQWNCT 420 DIEGTSSNVS PQPCESLADK GAGNSFSCPF PTDKLPIEDV QLKTCTY* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 1.0e-21 | 45 | 436 | 404 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 2.0e-24 | 43 | 431 | 405 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 2.0e-28 | 40 | 407 | 377 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 2.0e-29 | 103 | 422 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 4.0e-57 | 41 | 340 | 320 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU17976.1 | 0 | 7 | 467 | 19 | 471 | unknown [Glycine max] |
RefSeq | XP_002278930.1 | 0 | 21 | 467 | 33 | 475 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002299511.1 | 0 | 9 | 467 | 18 | 475 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002327490.1 | 0 | 3 | 466 | 1 | 449 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002513653.1 | 0 | 6 | 466 | 18 | 470 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 39 | 430 | 26 | 434 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 39 | 430 | 26 | 434 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 39 | 430 | 26 | 434 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 39 | 430 | 26 | 434 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 2e-16 | 85 | 379 | 52 | 335 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |