y
Basic Information | |
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Species | Aquilegia coerulea |
Cazyme ID | Aquca_038_00142.2 |
Family | PL1 |
Protein Properties | Length: 375 Molecular Weight: 42142.7 Isoelectric Point: 7.2794 |
Chromosome | Chromosome/Scaffold: 38 Start: 1609705 End: 1613375 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 173 | 360 | 0 |
WITFSSNMLIKLNQALIIKSFKTIDGRGVDVHITGEGCFSINGVSNIIIHNIHIHHCTPSKGHVQSDGDGITIMGSNNIWVDHCALSYCKDGLVDVTEGS TRVTISNNYFSHHDKVMLLGHSDKYEDDKRMQVTVAFNYFGEALIERMPRCRWGYFHVVNNDYRQWGEYAVGGSASPTINSQGNRYIA |
Full Sequence |
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Protein Sequence Length: 375 Download |
MMTIKYLPFL FNSYIYIIQS QRIQVFSHLG SIKMPLKTHI LLVIFLFSFF TSTIKAIQFN 60 LTHPHQHPDP EYVVQELQRR VNESVSRRKL LGVSEKDQLP CQTGNPIDDC WRCDPNWQAN 120 RQSLADCGIG FGHEAYGGKG GQIYVVTDSS DHNPENPTPG TLRFGAIQSE PLWITFSSNM 180 LIKLNQALII KSFKTIDGRG VDVHITGEGC FSINGVSNII IHNIHIHHCT PSKGHVQSDG 240 DGITIMGSNN IWVDHCALSY CKDGLVDVTE GSTRVTISNN YFSHHDKVML LGHSDKYEDD 300 KRMQVTVAFN YFGEALIERM PRCRWGYFHV VNNDYRQWGE YAVGGSASPT INSQGNRYIA 360 PSNANAKEVI FQAT* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 1.0e-25 | 137 | 356 | 245 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 7.0e-55 | 170 | 358 | 202 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-67 | 179 | 362 | 195 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI31414.1 | 0 | 34 | 369 | 1 | 323 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002265853.1 | 0 | 12 | 369 | 93 | 461 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002268818.1 | 0 | 57 | 369 | 24 | 348 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002272786.1 | 0 | 34 | 369 | 1 | 323 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002534016.1 | 0 | 40 | 369 | 9 | 348 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 105 | 369 | 2 | 279 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 105 | 369 | 2 | 279 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-19 | 123 | 349 | 1 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pcl_A | 3e-17 | 183 | 335 | 71 | 246 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
PDB | 1vbl_A | 1e-16 | 188 | 336 | 128 | 302 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
JG583515 | 295 | 59 | 324 | 0 |
CK243724 | 318 | 65 | 369 | 0 |
DY286386 | 336 | 38 | 361 | 0 |
DY293469 | 328 | 34 | 349 | 0 |
DY265324 | 291 | 79 | 357 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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