Basic Information | |
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Species | Aquilegia coerulea |
Cazyme ID | Aquca_056_00058.1 |
Family | PL1 |
Protein Properties | Length: 367 Molecular Weight: 40670.6 Isoelectric Point: 7.9399 |
Chromosome | Chromosome/Scaffold: 56 Start: 727533 End: 728841 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 80 | 285 | 0 |
IQDEPLWIIFARDMVIQLKEELIMNSFKTIDGRGVSVHIANGPCITIQYVTNVIIHGLHIHDCKPGGNAYVRSSPRHYGWRTISDGDGISIFGSSHVWVD HCSLSNCHDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIVYNHFGEGLVQRMPRCRHGYFDIVNNDYTHWEMYAIGGSAAPTINSK GNRFLA |
Full Sequence |
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Protein Sequence Length: 367 Download |
SINESRRNLG YLSCGTGNLI DDCWRCDRNW ANNRQRLADC VTGFGKNAIG GRNGRIYVVN 60 DSGNDDPVNP NPGTLRHAVI QDEPLWIIFA RDMVIQLKEE LIMNSFKTID GRGVSVHIAN 120 GPCITIQYVT NVIIHGLHIH DCKPGGNAYV RSSPRHYGWR TISDGDGISI FGSSHVWVDH 180 CSLSNCHDGL IDAIHGSTAI TISNNYMTHH DKVMLLGHSD SYTQDKNMQV TIVYNHFGEG 240 LVQRMPRCRH GYFDIVNNDY THWEMYAIGG SAAPTINSKG NRFLAPNIRF SKEVTKHENA 300 YEGEWKHWNW RSERDLMLNG AYFTPSGTIS SSSYAKATSL GARPPSLVGS MTIGSGALNC 360 KKGSHC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 7.0e-21 | 105 | 283 | 190 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 3.0e-61 | 98 | 283 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 4.0e-68 | 92 | 287 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABV32549.1 | 0 | 1 | 366 | 46 | 413 | pectase lyase [Prunus persica] |
GenBank | ADB90475.1 | 0 | 1 | 366 | 46 | 411 | pectate lyase [Gossypium herbaceum] |
DDBJ | BAE48664.1 | 0 | 1 | 366 | 46 | 413 | Pectate lyase [Prunus mume] |
EMBL | CBI14899.1 | 0 | 1 | 366 | 38 | 403 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002322215.1 | 0 | 1 | 366 | 38 | 403 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 18 | 327 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 18 | 327 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-17 | 87 | 284 | 50 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_B | 9e-16 | 108 | 292 | 90 | 296 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_A | 9e-16 | 108 | 292 | 90 | 296 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FG606120 | 342 | 1 | 342 | 0 |
HO778688 | 363 | 5 | 367 | 0 |
DY278910 | 337 | 1 | 337 | 0 |
JG581707 | 291 | 2 | 292 | 0 |
DY272271 | 309 | 1 | 309 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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