Basic Information | |
---|---|
Species | Aquilegia coerulea |
Cazyme ID | Aquca_056_00097.1 |
Family | PL4 |
Protein Properties | Length: 619 Molecular Weight: 71084.1 Isoelectric Point: 8.9567 |
Chromosome | Chromosome/Scaffold: 56 Start: 1303889 End: 1307402 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
PL4 | 1 | 600 | 0 |
MDNGMVQVTLSKPDGIVTGIKYNGVDNLLDTHSAEDERGYWDLNWNEPKKSGMFDIIKGTQFKVILQNESQIEISFTRTWRSSQKGFLVPLNIDKRFIML QDSHGFYTYSIYEHLKGWPAFDLGVTRLTFKLRKNMFRYMAVDDRRQRRMPLPDDRMPRRSESLAYKEAVRLVNPSDQEFAGEVDDKYQYSCENEDIKVH GWMTNNNSPVGFWHITPSHEFRSGGPFKQELTSHVGPTTLTVFISPHYMGSDGTPKFQNGEAWKKVFGPVFIYLNSGLPGTKRDTLWEDAKNQTGIEMKS WPYSFPVSDDFPKSEQRGSVYGRLFVQDRYINKFDIPADSAHVGLALPGDVGSWQTEGKGYQFWTISQTNGSFAINNIRPGIYNIYASVPGFIGDYKSHQ IVTIRPGDNINLGDLIYTPPRTGPTLWEIGYPDRSAAEFFIPNPGPGYVNPLYMKHDRFRQYGLWEKYSTLHPLEDLVYTINSSDHRKDWFFAHVTRKTG LSYKATTWRVKFNLTNVGKSRTYKLQLALASATYAELQVRFNYLNVRRPHFTTGLIGRDNAVARHGIHGMYWLFNIDVNSDWLVDGENVMFLTQARGSDP |
Full Sequence |
---|
Protein Sequence Length: 619 Download |
MDNGMVQVTL SKPDGIVTGI KYNGVDNLLD THSAEDERGY WDLNWNEPKK SGMFDIIKGT 60 QFKVILQNES QIEISFTRTW RSSQKGFLVP LNIDKRFIML QDSHGFYTYS IYEHLKGWPA 120 FDLGVTRLTF KLRKNMFRYM AVDDRRQRRM PLPDDRMPRR SESLAYKEAV RLVNPSDQEF 180 AGEVDDKYQY SCENEDIKVH GWMTNNNSPV GFWHITPSHE FRSGGPFKQE LTSHVGPTTL 240 TVFISPHYMG SDGTPKFQNG EAWKKVFGPV FIYLNSGLPG TKRDTLWEDA KNQTGIEMKS 300 WPYSFPVSDD FPKSEQRGSV YGRLFVQDRY INKFDIPADS AHVGLALPGD VGSWQTEGKG 360 YQFWTISQTN GSFAINNIRP GIYNIYASVP GFIGDYKSHQ IVTIRPGDNI NLGDLIYTPP 420 RTGPTLWEIG YPDRSAAEFF IPNPGPGYVN PLYMKHDRFR QYGLWEKYST LHPLEDLVYT 480 INSSDHRKDW FFAHVTRKTG LSYKATTWRV KFNLTNVGKS RTYKLQLALA SATYAELQVR 540 FNYLNVRRPH FTTGLIGRDN AVARHGIHGM YWLFNIDVNS DWLVDGENVM FLTQARGSDP 600 FRSVMYDYIR FEGPSTAS* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13620 | CarboxypepD_reg | 0.001 | 355 | 412 | 58 | + Carboxypeptidase regulatory-like domain. | ||
cd10316 | RGL4_M | 7.0e-27 | 316 | 415 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 2.0e-47 | 427 | 612 | 188 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 3.0e-59 | 1 | 277 | 283 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 5.0e-72 | 1 | 184 | 184 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_172460.6 | 0 | 1 | 615 | 1 | 617 | lyase [Arabidopsis thaliana] |
RefSeq | XP_002285626.1 | 0 | 1 | 616 | 1 | 617 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002445711.1 | 0 | 1 | 615 | 44 | 661 | hypothetical protein SORBIDRAFT_07g024560 [Sorghum bicolor] |
RefSeq | XP_002527352.1 | 0 | 1 | 615 | 17 | 632 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527353.1 | 0 | 1 | 618 | 17 | 637 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
DY922281 | 278 | 256 | 530 | 0 |
GW864372 | 312 | 128 | 439 | 0 |
DY969340 | 321 | 215 | 532 | 0 |
EH722500 | 265 | 161 | 425 | 0 |
EL409069 | 275 | 335 | 606 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|