Basic Information | |
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Species | Aquilegia coerulea |
Cazyme ID | Aquca_061_00050.1 |
Family | GH28 |
Protein Properties | Length: 475 Molecular Weight: 51641.5 Isoelectric Point: 9.7017 |
Chromosome | Chromosome/Scaffold: 61 Start: 627098 End: 629757 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 105 | 439 | 0 |
AACMVGSATLKIPSNFKFLISPITLQGPCMPKLVLQIDGTLLASPKVASWQRSSLFQWLNFKWIQNFTIQGTGTIDGQGSAWWNLSQVLYIQKRSKQIPG MKPTALRFYESYNVTVRDIKIINSPLCHLKFDDSGSINIDNITISSPADSPNTDGIHFQNTKDVEIQHSNIGCGDDCVSIQTGCSNIHVHHISCGPGHGI SLGSLGKDRTVACVKDIVVENIIMQDTLYGARIKTWQGGIGSVKNVSFSNIQVSNVKVPIMIDQFYCDKRKCKNQTDAVAIYGVKYNQIIGTYSAQPIHL ACSNSVPCKKVDLIDIQLSPLSKSGGFQQALCLNT |
Full Sequence |
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Protein Sequence Length: 475 Download |
MKNTKKPSLL FILLVVMIFV AFLTMSIEGR KNHHKKSRAH KHKKRGGGNG NNAPGPEHSP 60 STAPAPAPSH GYYPISSSVF NVLSFGAKGD GVVDDSKALQ AAWKAACMVG SATLKIPSNF 120 KFLISPITLQ GPCMPKLVLQ IDGTLLASPK VASWQRSSLF QWLNFKWIQN FTIQGTGTID 180 GQGSAWWNLS QVLYIQKRSK QIPGMKPTAL RFYESYNVTV RDIKIINSPL CHLKFDDSGS 240 INIDNITISS PADSPNTDGI HFQNTKDVEI QHSNIGCGDD CVSIQTGCSN IHVHHISCGP 300 GHGISLGSLG KDRTVACVKD IVVENIIMQD TLYGARIKTW QGGIGSVKNV SFSNIQVSNV 360 KVPIMIDQFY CDKRKCKNQT DAVAIYGVKY NQIIGTYSAQ PIHLACSNSV PCKKVDLIDI 420 QLSPLSKSGG FQQALCLNTY GKSFAPLVPS SIDYCLKKGG TSYNSLTKSH KYTC* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 2.0e-72 | 112 | 438 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03010 | PLN03010 | 4.0e-73 | 75 | 443 | 374 | + polygalacturonase | ||
PLN03003 | PLN03003 | 1.0e-75 | 76 | 443 | 375 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 5.0e-81 | 76 | 422 | 352 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 6.0e-97 | 74 | 450 | 381 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_189293.1 | 0 | 28 | 474 | 29 | 468 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002266099.1 | 0 | 28 | 474 | 29 | 476 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312682.1 | 0 | 30 | 470 | 31 | 461 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002315680.1 | 0 | 80 | 457 | 1 | 372 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527898.1 | 0 | 2 | 474 | 3 | 477 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 4e-28 | 170 | 381 | 110 | 324 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 7e-22 | 105 | 438 | 1 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 7e-22 | 105 | 438 | 1 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 7e-22 | 105 | 438 | 1 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 7e-22 | 105 | 438 | 1 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |