y
Basic Information | |
---|---|
Species | Aquilegia coerulea |
Cazyme ID | Aquca_066_00046.1 |
Family | PL1 |
Protein Properties | Length: 363 Molecular Weight: 40143.1 Isoelectric Point: 5.9917 |
Chromosome | Chromosome/Scaffold: 66 Start: 1043848 End: 1045160 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
PL1 | 81 | 283 | 0 |
PLWITFSEDMAITLKNELIINSYKTIDGRGANVEIANGPCITIQDVSHIIIHGISIHDCKPSEGGMVRSNVTHVGHRLPSDGDGIDIFASNNIWIDHCFL ARCTDGLLDVIHASTSITISNNFFTQHDKVMLLGHNDEFTADKIMKVTVVFNYFGPELVQRMPRVRNGYAHVANNRYEEWEMYAIGGSANPTILSEGNYF NAP |
Full Sequence |
---|
Protein Sequence Length: 363 Download |
NLFKPISTNV KKNIMNEIDS CWRSNPDWAS DRCALADCVV GFGQATVGGK NGAFYEVTDS 60 SDDPINPEPG TLRYGVIQTE PLWITFSEDM AITLKNELII NSYKTIDGRG ANVEIANGPC 120 ITIQDVSHII IHGISIHDCK PSEGGMVRSN VTHVGHRLPS DGDGIDIFAS NNIWIDHCFL 180 ARCTDGLLDV IHASTSITIS NNFFTQHDKV MLLGHNDEFT ADKIMKVTVV FNYFGPELVQ 240 RMPRVRNGYA HVANNRYEEW EMYAIGGSAN PTILSEGNYF NAPTNPDIKQ VTKRETDGGW 300 KNWKWRSSKD VFENGAYFVQ SGWGSIAPLY SKPQSFTVAD GSIVPYLTSA AGPLRCRTRY 360 AC* 420 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 4.0e-26 | 46 | 322 | 291 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-58 | 95 | 280 | 211 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 9.0e-69 | 89 | 283 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002263615.1 | 0 | 14 | 362 | 49 | 397 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002317132.1 | 0 | 4 | 362 | 31 | 393 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331545.1 | 0 | 12 | 362 | 42 | 392 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518441.1 | 0 | 4 | 362 | 16 | 377 | Pectate lyase precursor, putative [Ricinus communis] |
RefSeq | XP_002518442.1 | 0 | 3 | 362 | 28 | 390 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 16 | 352 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 16 | 352 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-17 | 95 | 280 | 61 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 1e-16 | 98 | 281 | 128 | 331 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1jta_A | 0.0000000000009 | 95 | 280 | 80 | 287 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
HO778688 | 351 | 16 | 363 | 0 |
GT740031 | 304 | 26 | 325 | 0 |
FG606120 | 322 | 16 | 334 | 0 |
GW721137 | 288 | 41 | 325 | 0 |
CO201745 | 278 | 32 | 306 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|