Basic Information | |
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Species | Aquilegia coerulea |
Cazyme ID | Aquca_070_00020.1 |
Family | PL1 |
Protein Properties | Length: 349 Molecular Weight: 38272.6 Isoelectric Point: 9.1805 |
Chromosome | Chromosome/Scaffold: 70 Start: 841629 End: 842958 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 69 | 268 | 0 |
WIIFARDMVIKLGNELMMNSFKTIDGRGVKVEIANGPCITVQNVHNIIIHGIGLHDCKPGKSGLVRDSPTHVGHRRGSDGDAIVIFASSNIWVDHCFLSR STDGLIDVIHASTAVTISNNYFSQHDKVMLFGHSDQFTDDKIMKVTVVFNRFGPGLIERMPRVRFGYAHVVNNRYESWQMYAIGGSANPTILSEGNYFFA |
Full Sequence |
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Protein Sequence Length: 349 Download |
MNTIDSCWRS DPNWAMHRQA LADCAIGFGK AAIGGKYGAI YVVTDPSDDP ANPKPGTLRY 60 GVIQTKPLWI IFARDMVIKL GNELMMNSFK TIDGRGVKVE IANGPCITVQ NVHNIIIHGI 120 GLHDCKPGKS GLVRDSPTHV GHRRGSDGDA IVIFASSNIW VDHCFLSRST DGLIDVIHAS 180 TAVTISNNYF SQHDKVMLFG HSDQFTDDKI MKVTVVFNRF GPGLIERMPR VRFGYAHVVN 240 NRYESWQMYA IGGSANPTIL SEGNYFFAPQ NPSSKQVTKR ESGGWKNWKW RSSNDMFVNG 300 AFFVPSGWGS CAPYYSKSQV FSVAQAALVP ALTSNAGPLG CVARKPCY* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 4.0e-32 | 88 | 286 | 211 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-65 | 86 | 266 | 190 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 8.0e-79 | 75 | 269 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_172656.1 | 0 | 2 | 347 | 37 | 384 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002263615.1 | 0 | 1 | 347 | 50 | 397 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002331545.1 | 0 | 1 | 347 | 45 | 392 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518441.1 | 0 | 1 | 347 | 30 | 377 | Pectate lyase precursor, putative [Ricinus communis] |
RefSeq | XP_002518442.1 | 0 | 1 | 347 | 43 | 390 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 2 | 337 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 2 | 337 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 9e-17 | 70 | 268 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pcl_A | 5e-16 | 79 | 266 | 71 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
PDB | 1bn8_A | 0.000000000000002 | 149 | 244 | 205 | 317 | A Chain A, Bacillus Subtilis Pectate Lyase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO778688 | 350 | 2 | 347 | 0 |
FS081523 | 247 | 103 | 347 | 0 |
FG606120 | 323 | 2 | 320 | 0 |
BQ505865 | 303 | 42 | 341 | 0 |
DT556743 | 303 | 48 | 347 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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