Basic Information | |
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Species | Aquilegia coerulea |
Cazyme ID | Aquca_076_00048.1 |
Family | GH28 |
Protein Properties | Length: 493 Molecular Weight: 55046.1 Isoelectric Point: 9.9383 |
Chromosome | Chromosome/Scaffold: 76 Start: 328899 End: 333975 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 102 | 452 | 0 |
FGKKGGGQLNIQAGNWLTAPFNLTSHMTLFLAEDAVILGADDENLWTLMPPLPSYGAGREHPGPRYGSLIHGQNLTDIIITGYNGTIDGQGNAWWKKFRQ KLLKHTRGPLVQIMRSSNIQISNITLQNSPFWTLHPYDCKNITITGVTILAPIFGAPNTDGINPDSCENMVIEDCYISVGDDGIAIKSGWNQYGIAYGRP SKDIFIRNVSIRSMVSAGVSIGSEMSGGVSNVTVENLLVWSSRRGVRIKTSPGRGGYVRRITYRNVTFDNVRVGIVIKTDYSEHPDEGYNPKALPILQDI SFTGIYGQGVRVPVRINGSEEIPVRNVTFQDMSVGITYKKKHIFQCAFVQG |
Full Sequence |
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Protein Sequence Length: 493 Download |
MVETPRFRRN HHHRSDSKWS IPVFLSSQKT LWTLLWIVGF VSLFIWQRNV IDGLLLFRKL 60 PPKPIPKLRP FVFNLTDFGG IGDGKTMNTK AFEKAVASIA KFGKKGGGQL NIQAGNWLTA 120 PFNLTSHMTL FLAEDAVILG ADDENLWTLM PPLPSYGAGR EHPGPRYGSL IHGQNLTDII 180 ITGYNGTIDG QGNAWWKKFR QKLLKHTRGP LVQIMRSSNI QISNITLQNS PFWTLHPYDC 240 KNITITGVTI LAPIFGAPNT DGINPDSCEN MVIEDCYISV GDDGIAIKSG WNQYGIAYGR 300 PSKDIFIRNV SIRSMVSAGV SIGSEMSGGV SNVTVENLLV WSSRRGVRIK TSPGRGGYVR 360 RITYRNVTFD NVRVGIVIKT DYSEHPDEGY NPKALPILQD ISFTGIYGQG VRVPVRINGS 420 EEIPVRNVTF QDMSVGITYK KKHIFQCAFV QGRVIGSIFP SPCENLDRYD EQARLIKHSI 480 NQNITNIDYD FR* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 4.0e-26 | 73 | 463 | 413 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02793 | PLN02793 | 1.0e-28 | 33 | 463 | 447 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 2.0e-30 | 73 | 435 | 373 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 4.0e-40 | 171 | 442 | 278 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 2.0e-65 | 72 | 393 | 347 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN69988.1 | 0 | 1 | 491 | 1 | 509 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002277239.1 | 0 | 1 | 491 | 1 | 493 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002324728.1 | 0 | 1 | 491 | 1 | 495 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002326133.1 | 0 | 1 | 491 | 1 | 495 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516244.1 | 0 | 1 | 491 | 2 | 494 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 2.8026e-45 | 66 | 432 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 2.8026e-45 | 66 | 432 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 2.8026e-45 | 66 | 432 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 2.8026e-45 | 66 | 432 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 2e-23 | 107 | 430 | 39 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |