| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra000183 |
| Family | GH28 |
| Protein Properties | Length: 404 Molecular Weight: 43904.1 Isoelectric Point: 8.8819 |
| Chromosome | Chromosome/Scaffold: 03 Start: 9767550 End: 9769171 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 56 | 391 | 0 |
| KSACTRKGGNSKIYVPKGMFYLGGVEFVGPCENQIEFVIDGTLLAPSNPRDIKNDTWIQFRYINNLMISGSGTLDGQGKDSWPLNDCHKNPNCPKLAMTM GFAFVNNSRINGITSLNSKMGHFNFFSVHHFNTPDVTITAPGDSPNTDGLKFGFCSNINISKTHIGTGDDCIAILSGTTNMDISNVNCGPGHGISVGRLG KNKEEKNVNGLTVRDIVFNGTSDGIRIKTWESSASKILVSNFVYENIQMINVGNPINIDQKYCPHPPCQKKGESHVQIQDLKLKNIYGTSTNKVAVNLQC SKSFPCKKVELIDINLEHKGVEGGPSTAVCENVDGS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 404 Download |
| MTCIASVFKA LCLSLLFVAA VASRPTNRPK IFNVQRYGAK ANGKTDNTKA FTNIWKSACT 60 RKGGNSKIYV PKGMFYLGGV EFVGPCENQI EFVIDGTLLA PSNPRDIKND TWIQFRYINN 120 LMISGSGTLD GQGKDSWPLN DCHKNPNCPK LAMTMGFAFV NNSRINGITS LNSKMGHFNF 180 FSVHHFNTPD VTITAPGDSP NTDGLKFGFC SNINISKTHI GTGDDCIAIL SGTTNMDISN 240 VNCGPGHGIS VGRLGKNKEE KNVNGLTVRD IVFNGTSDGI RIKTWESSAS KILVSNFVYE 300 NIQMINVGNP INIDQKYCPH PPCQKKGESH VQIQDLKLKN IYGTSTNKVA VNLQCSKSFP 360 CKKVELIDIN LEHKGVEGGP STAVCENVDG STRGKMVPQH CLN* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 2.0e-79 | 29 | 399 | 377 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 3.0e-81 | 1 | 403 | 410 | + Probable polygalacturonase | ||
| PLN02155 | PLN02155 | 2.0e-81 | 10 | 403 | 397 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-91 | 63 | 388 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 6.0e-120 | 31 | 401 | 372 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_175003.1 | 0 | 1 | 403 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_175004.1 | 0 | 1 | 395 | 1 | 396 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_175005.1 | 0 | 1 | 395 | 1 | 396 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_181560.1 | 0 | 1 | 403 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_193112.2 | 0 | 1 | 403 | 1 | 404 | polygalacturonase [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 2e-18 | 110 | 357 | 100 | 349 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_B | 0.000000000002 | 119 | 388 | 72 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_A | 0.000000000002 | 119 | 388 | 72 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ia5_A | 0.000000000002 | 119 | 388 | 72 | 333 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
| PDB | 2iq7_G | 0.000000000004 | 128 | 388 | 79 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
