| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra000327 |
| Family | GH28 |
| Protein Properties | Length: 475 Molecular Weight: 52881.3 Isoelectric Point: 7.264 |
| Chromosome | Chromosome/Scaffold: 03 Start: 10554395 End: 10557400 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 56 | 333 | 0 |
| NSACTRKGGNSKIYVPKGTFYLSGLEFVGPCVNQIEFVNDGTLLAPANPRDIKQDIWIKFRYINNLIISGAGTLDGQGKESWPLNDCHKNPNCPKLAMTM GFAFVNNSRINGITSLNSKMGHFNFFYVHHFNITNVTITAPGDSPNTDGLKFGFCSNINISNTHIGTGDDCIAILSGTTNMDISNVTCGPGHGISVGSLG KNKEEKDVNGLTVRDIVFNGTSDGIRIKTWESSASKILVSNFVYENIQMINVGNPINIDQKYCPHPPCEKKIVAIRDI | |||
| Full Sequence |
|---|
| Protein Sequence Length: 475 Download |
| MTCITSTFKA LCLSFLFVTA VASRPTNRPK VFNVQRYGAK ADGKTDNAKA FTSIWNSACT 60 RKGGNSKIYV PKGTFYLSGL EFVGPCVNQI EFVNDGTLLA PANPRDIKQD IWIKFRYINN 120 LIISGAGTLD GQGKESWPLN DCHKNPNCPK LAMTMGFAFV NNSRINGITS LNSKMGHFNF 180 FYVHHFNITN VTITAPGDSP NTDGLKFGFC SNINISNTHI GTGDDCIAIL SGTTNMDISN 240 VTCGPGHGIS VGSLGKNKEE KDVNGLTVRD IVFNGTSDGI RIKTWESSAS KILVSNFVYE 300 NIQMINVGNP INIDQKYCPH PPCEKKIVAI RDIIPPPLRT VFNDVYIAYE LMDTDLHQIM 360 RSNQGLSEEH CQRYIRQLPP YPRQSITDKF PNVYPLAIDL IEKMLTFDPR RRVTVLDALA 420 HPYLNSLHAI SDEPECTIPF NFDFEQHALS EEQMKELIYR EALAFNPEYQ PAIA* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 1.0e-66 | 13 | 319 | 309 | + polygalacturonase | ||
| PLN03010 | PLN03010 | 3.0e-69 | 30 | 317 | 294 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 1.0e-69 | 29 | 331 | 310 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-80 | 63 | 333 | 273 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 7.0e-102 | 32 | 333 | 306 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_175003.1 | 0 | 1 | 333 | 1 | 337 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_175004.1 | 0 | 1 | 333 | 1 | 337 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_175005.1 | 0 | 1 | 333 | 1 | 337 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_181560.1 | 0 | 1 | 324 | 1 | 323 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_193112.2 | 0 | 1 | 324 | 1 | 323 | polygalacturonase [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3gp0_A | 8e-18 | 366 | 467 | 248 | 348 | A Chain A, Crystal Structure Of Human Mitogen Activated Protein Kinase 11 (p38 Beta) In Complex With Nilotinib |
| PDB | 4iza_C | 2e-17 | 371 | 470 | 256 | 355 | A Chain A, Structure Of Dually Phosphorylated Erk2 Bound To The Pea-15 Death Effector Domain |
| PDB | 4iza_A | 2e-17 | 371 | 470 | 256 | 355 | A Chain A, Structure Of Dually Phosphorylated Erk2 Bound To The Pea-15 Death Effector Domain |
