| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra000331 |
| Family | GH28 |
| Protein Properties | Length: 410 Molecular Weight: 43715.8 Isoelectric Point: 6.8884 |
| Chromosome | Chromosome/Scaffold: 03 Start: 10591268 End: 10592756 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 57 | 389 | 0 |
| WQVACASVNPTTIIVPKGRFLVGNLVFQGKKCTDTPISIRIAGSLIAPEDYRIVASSEQWIWFESVTDVSIYGGILDAQGSSLWNCKNNGGSNCPTGAKT LLFSGSNNININGLTSINSQKFHIVINSCNNVNIDGVKVSADANSPNTDGIHIQSSHLVSITNSRIGTGDDCISIGPGSTHVSIQGIQCGPGHGISIGSL GIAEEEQGVENVTVSNVDFTATSNGVRIKTWAKNSKSFARNIVFQHINMQMVKNPIIIDQHYCFYKPCPKQESGVEVSNVRYEDIHGTSSTDVAVKLDCS KEKPCTGIVMDNVNLALQLVNQPAQASCSNANG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 410 Download |
| MVYKTSCLLL PLALVFLDFI ITSSLAKPIP TTFINVLTYG AKPDGSTDST KAFLAAWQVA 60 CASVNPTTII VPKGRFLVGN LVFQGKKCTD TPISIRIAGS LIAPEDYRIV ASSEQWIWFE 120 SVTDVSIYGG ILDAQGSSLW NCKNNGGSNC PTGAKTLLFS GSNNININGL TSINSQKFHI 180 VINSCNNVNI DGVKVSADAN SPNTDGIHIQ SSHLVSITNS RIGTGDDCIS IGPGSTHVSI 240 QGIQCGPGHG ISIGSLGIAE EEQGVENVTV SNVDFTATSN GVRIKTWAKN SKSFARNIVF 300 QHINMQMVKN PIIIDQHYCF YKPCPKQESG VEVSNVRYED IHGTSSTDVA VKLDCSKEKP 360 CTGIVMDNVN LALQLVNQPA QASCSNANGL ANDVVIPFTP CLKRDILMT* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-87 | 61 | 387 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 6.0e-89 | 23 | 405 | 390 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 8.0e-93 | 30 | 397 | 374 | + polygalacturonase ADPG | ||
| PLN02188 | PLN02188 | 4.0e-105 | 23 | 387 | 371 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 5.0e-113 | 35 | 404 | 371 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC64184.1 | 0 | 9 | 402 | 7 | 393 | endopolygalacturonase [Prunus persica] |
| GenBank | ABK28534.1 | 0 | 9 | 397 | 1 | 381 | unknown [Arabidopsis thaliana] |
| GenBank | ABV32553.1 | 0 | 9 | 402 | 7 | 393 | endopolygalacturonase [Prunus persica] |
| RefSeq | NP_181914.1 | 0 | 1 | 409 | 1 | 405 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | NP_181915.1 | 0 | 9 | 397 | 1 | 381 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 6e-19 | 129 | 384 | 77 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 6e-19 | 129 | 384 | 77 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 6e-19 | 129 | 384 | 77 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 6e-19 | 129 | 384 | 77 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 6e-19 | 129 | 384 | 77 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
