| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra000332 |
| Family | GH28 |
| Protein Properties | Length: 386 Molecular Weight: 41008.7 Isoelectric Point: 8.1671 |
| Chromosome | Chromosome/Scaffold: 03 Start: 10598931 End: 10601203 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 45 | 371 | 0 |
| ETACASSRPVTIVVPKGRFLLRSLNFDGSKCKPKPVTFRIDGSLVAPADYRVIGNEDYWIFFQHLDGVTVYGGVFDAQGTSLWDCKKSGKNCPSGATTIG FQSSSNVVVSGLTSLNSQMFHVVINGCNNVKLQGVKVLAAGDSPNTDGIHVQSSSTVSIFNTKISTGDDCVSIGPGTNGLWIENVACGPGHGISIGSLGK DSVEEGVQNVTVKTVTFTGTDNGVRIKSWARPSSGFARDIRFQHCVMNNVGNPILIDQNYCPRNENCPRQVSGIKISDVLFVDIHGTSATEVGVKLDCSP KKPCTGIRLEDVKLTYRNKPAASACVH | |||
| Full Sequence |
|---|
| Protein Sequence Length: 386 Download |
| MASLLVLFVF FFISSCSAQS YNVLSFGAKP DGKTDATKAF MAVWETACAS SRPVTIVVPK 60 GRFLLRSLNF DGSKCKPKPV TFRIDGSLVA PADYRVIGNE DYWIFFQHLD GVTVYGGVFD 120 AQGTSLWDCK KSGKNCPSGA TTIGFQSSSN VVVSGLTSLN SQMFHVVING CNNVKLQGVK 180 VLAAGDSPNT DGIHVQSSST VSIFNTKIST GDDCVSIGPG TNGLWIENVA CGPGHGISIG 240 SLGKDSVEEG VQNVTVKTVT FTGTDNGVRI KSWARPSSGF ARDIRFQHCV MNNVGNPILI 300 DQNYCPRNEN CPRQVSGIKI SDVLFVDIHG TSATEVGVKL DCSPKKPCTG IRLEDVKLTY 360 RNKPAASACV HAGGIEAGFL QPNCL* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 2.0e-86 | 22 | 384 | 370 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 9.0e-89 | 48 | 365 | 323 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 2.0e-91 | 23 | 382 | 368 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 5.0e-106 | 17 | 382 | 372 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 3.0e-142 | 13 | 385 | 375 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK28534.1 | 0 | 1 | 385 | 1 | 384 | unknown [Arabidopsis thaliana] |
| EMBL | CAB75804.1 | 0 | 18 | 385 | 20 | 383 | polygalacturonase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_181915.1 | 0 | 1 | 385 | 1 | 384 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | NP_191544.2 | 0 | 18 | 385 | 20 | 388 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002529090.1 | 0 | 3 | 385 | 10 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 4e-21 | 114 | 359 | 113 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1hg8_A | 4e-16 | 58 | 336 | 28 | 309 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 1czf_B | 0.000000000000001 | 107 | 366 | 95 | 352 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1czf_A | 0.000000000000001 | 107 | 366 | 95 | 352 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1ib4_B | 0.00000000000003 | 116 | 331 | 81 | 294 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
