| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra000382 |
| Family | CE8 |
| Protein Properties | Length: 511 Molecular Weight: 55809.1 Isoelectric Point: 9.7613 |
| Chromosome | Chromosome/Scaffold: 03 Start: 10844834 End: 10847069 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 206 | 495 | 0 |
| AVVAKDGSGNFRTIKDAINAASGSGRFVIYVKQGVYSENLEIRKKNVMLRGDGKGRTIITGSRSVGGGSTTFNSATVAAVGDGFIARGITFRNTAGANNA QAVALRSGSDLSVFYQCSFEGYQDTLYVHSNRQFYRDCDVYGTVDFIFGNAAAVLQNCNIFARRPRSRTNTITAQGRSDPNQNTGIIIHNSRVTAASDLR PVLGSTKTYLGRPWRQYSRTVFMKTSLDSLIDPRGWLEWDGNFALSTLFYAEFQNTGPGASTSGRVTWPGFRVLSSTSEASRFTVGSFLA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 511 Download |
| MAFRVDILTF VFLCILAAST VSGYNSKDVK AWCSQTPNPK PCEYFLTHNS NQKPIKSESE 60 FLKISMKLAL DRAILAKSHA STLGPKCRDT REKAAWEDCI KLYDFTVSKI NETMNPNVKC 120 SKTDAQTWLS TALTNLDTCR AGFLELGVTD IVLPLMSNNV SNLICNTLAI NKVPFNYTPP 180 GKDGFPSWVK PGDRKLLQSS TPRDNAVVAK DGSGNFRTIK DAINAASGSG RFVIYVKQGV 240 YSENLEIRKK NVMLRGDGKG RTIITGSRSV GGGSTTFNSA TVAAVGDGFI ARGITFRNTA 300 GANNAQAVAL RSGSDLSVFY QCSFEGYQDT LYVHSNRQFY RDCDVYGTVD FIFGNAAAVL 360 QNCNIFARRP RSRTNTITAQ GRSDPNQNTG IIIHNSRVTA ASDLRPVLGS TKTYLGRPWR 420 QYSRTVFMKT SLDSLIDPRG WLEWDGNFAL STLFYAEFQN TGPGASTSGR VTWPGFRVLS 480 STSEASRFTV GSFLAGSSWI PSDVPFTSGL * 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02170 | PLN02170 | 8.0e-154 | 7 | 510 | 527 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02484 | PLN02484 | 2.0e-157 | 57 | 510 | 484 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02301 | PLN02301 | 3.0e-161 | 89 | 510 | 442 | + pectinesterase/pectinesterase inhibitor | ||
| PLN02995 | PLN02995 | 1.0e-179 | 7 | 510 | 528 | + Probable pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 0 | 205 | 497 | 298 | + Pectinesterase. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAB57671.1 | 0 | 1 | 510 | 1 | 510 | pectinesterase [Citrus sinensis] |
| RefSeq | NP_566038.1 | 0 | 1 | 510 | 2 | 511 | pectinesterase family protein [Arabidopsis thaliana] |
| Swiss-Prot | O04887 | 0 | 1 | 510 | 1 | 510 | PME2_CITSI RecName: Full=Pectinesterase 2; Short=PE 2; AltName: Full=Pectin methylesterase; Flags: Precursor |
| RefSeq | XP_002280446.1 | 0 | 7 | 510 | 2 | 513 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002511679.1 | 0 | 20 | 510 | 19 | 514 | Pectinesterase-2 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 198 | 510 | 1 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0 | 205 | 510 | 4 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_B | 9e-33 | 205 | 468 | 5 | 314 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_A | 9e-33 | 205 | 468 | 5 | 314 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntp_B | 9e-33 | 205 | 468 | 5 | 314 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
