| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra000540 |
| Family | CE8 |
| Protein Properties | Length: 547 Molecular Weight: 60252.4 Isoelectric Point: 5.2089 |
| Chromosome | Chromosome/Scaffold: 03 Start: 11664960 End: 11667009 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 238 | 530 | 0 |
| IVAADGTGNFTTINEAISFAPNMSNDRVLIYVREGEYNENIEIPSYKTNIVLIGDGSDVTFVTGNRSVGDGWTTFRSATLAVSGEGFLARDITIMNTAGP EKHQAVALRVNADFVALYRCVIDGYQDTLYTHSFRQFYRECDIYGTIDYIFGNAAVVFPGCNIVSKLPMPGQFTVVTAQSRDSPDEDTGISMQNCSIFAT DDLLNSSTRVNSYLGRPWRGYSRTVLMESFIDEFIDRSGWTKWAGGEGLDTLYYGEYNNNGPGSDTSKRVNWSGYHIMGYEDAFNFTTTEFIT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 547 Download |
| MALSSLSFYF LCFLLFTPSI FSYSSPTSPN PNQISATSFC KNAPYPDACF HSLKLSLSIN 60 ISPNILSFLL QTLKLALSEA GKLTDLLSAA GISNNLVEGQ RGSLQDCKDL HHITSSVLKR 120 SLSKISEDAN DPRKLAAARA YLSAALTNKN TCLEGLDSAS GPLKPKLVTS FTTTYKHVSN 180 SLSALSKQRK TNHLKTNSKT KNRRLLGLFP DWISGKDRRF LEDSGDEYDE YEPSEILIVA 240 ADGTGNFTTI NEAISFAPNM SNDRVLIYVR EGEYNENIEI PSYKTNIVLI GDGSDVTFVT 300 GNRSVGDGWT TFRSATLAVS GEGFLARDIT IMNTAGPEKH QAVALRVNAD FVALYRCVID 360 GYQDTLYTHS FRQFYRECDI YGTIDYIFGN AAVVFPGCNI VSKLPMPGQF TVVTAQSRDS 420 PDEDTGISMQ NCSIFATDDL LNSSTRVNSY LGRPWRGYSR TVLMESFIDE FIDRSGWTKW 480 AGGEGLDTLY YGEYNNNGPG SDTSKRVNWS GYHIMGYEDA FNFTTTEFIT GDGWLGSTSF 540 PYDNGI* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02201 | PLN02201 | 2.0e-140 | 147 | 546 | 408 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02301 | PLN02301 | 3.0e-145 | 74 | 546 | 475 | + pectinesterase/pectinesterase inhibitor | ||
| PLN02713 | PLN02713 | 1.0e-162 | 17 | 546 | 554 | + Probable pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 3.0e-180 | 238 | 532 | 296 | + Pectinesterase. | ||
| PLN02416 | PLN02416 | 0 | 17 | 546 | 536 | + probable pectinesterase/pectinesterase inhibitor | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAH56489.1 | 0 | 3 | 546 | 12 | 543 | pectin methylesterase 1 [Prunus persica] |
| RefSeq | NP_180212.1 | 0 | 17 | 546 | 18 | 547 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002273535.1 | 0 | 11 | 546 | 6 | 529 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002326320.1 | 0 | 24 | 546 | 27 | 539 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002516192.1 | 0 | 35 | 546 | 43 | 543 | Pectinesterase PPE8B precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1xg2_A | 0 | 238 | 546 | 6 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1gq8_A | 0 | 237 | 546 | 9 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 3uw0_A | 1e-18 | 247 | 501 | 44 | 335 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_B | 3e-18 | 247 | 505 | 18 | 315 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_A | 3e-18 | 247 | 505 | 18 | 315 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
