y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra000541 |
Family | CE8 |
Protein Properties | Length: 604 Molecular Weight: 67042 Isoelectric Point: 7.9638 |
Chromosome | Chromosome/Scaffold: 03 Start: 11673578 End: 11675891 |
Description | Plant invertase/pectin methylesterase inhibitor superfamily |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 291 | 586 | 0 |
ATVAKDGSGNFTTINDALKAMPEKYEGRYIIYVKQGVYDESVTVDKKKANLTMVGDGSQKTIVTGNKSHAKKIRTFLTATFVAQGEGFMAQSMGFRNTAG PDEHQAVAIRVQSDRSVFLNCRFEGFQDTLYAYTHRQYYRSCVIVGTIDFIFGDAAAIFQNCNIFIRKGLSGQKNTVSAQGRVDKFQTTGFVIHKCKITA NEDLKPVKAEYKSYLGRPWKNYSRTVVMESTIEDVIDPVGWLRWEETDFAIDTLYYAEYKNKGPSGDTASRVTWPGFKVINKEEALNYTVGPFLQG |
Full Sequence |
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Protein Sequence Length: 604 Download |
MAFQDFDKIQ ERVNANRKRK FRKRIIVGTV SLLVVVAAII GGAFAYVAFE KQNEQEPKNN 60 HKNDAKDSQK KSQSASPTPK APVAAAQSVK PGQADKIIET LCSTTLYKVS CENTLKNSTE 120 KGFALESPTT FLKAAIEAVN EDLDRVLEKV LSLKTENQDD KDAIAQCKLL VEDAKEEIVA 180 SLDKVNGTEI NNVVKIVPDL DNWLSAVMSY QETCIDGFEE GNLKSEVKKS VNSSQVLTSN 240 SLALIKSFDA NISPVEKLAT RHLLDQVPSW VTNEDRRMLR AVDVETLNPN ATVAKDGSGN 300 FTTINDALKA MPEKYEGRYI IYVKQGVYDE SVTVDKKKAN LTMVGDGSQK TIVTGNKSHA 360 KKIRTFLTAT FVAQGEGFMA QSMGFRNTAG PDEHQAVAIR VQSDRSVFLN CRFEGFQDTL 420 YAYTHRQYYR SCVIVGTIDF IFGDAAAIFQ NCNIFIRKGL SGQKNTVSAQ GRVDKFQTTG 480 FVIHKCKITA NEDLKPVKAE YKSYLGRPWK NYSRTVVMES TIEDVIDPVG WLRWEETDFA 540 IDTLYYAEYK NKGPSGDTAS RVTWPGFKVI NKEEALNYTV GPFLQGDWIN ALGSPVKLGL 600 YDA* 660 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02990 | PLN02990 | 1.0e-147 | 93 | 589 | 513 | + Probable pectinesterase/pectinesterase inhibitor | ||
PLN02468 | PLN02468 | 2.0e-156 | 88 | 600 | 525 | + putative pectinesterase/pectinesterase inhibitor | ||
PLN02314 | PLN02314 | 8.0e-157 | 2 | 600 | 621 | + pectinesterase | ||
PLN02745 | PLN02745 | 0 | 1 | 601 | 615 | + Putative pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 0 | 290 | 587 | 299 | + Pectinesterase. |
Gene Ontology | |
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GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC14494.1 | 0 | 111 | 603 | 4 | 496 | putative pectinesterase [Arabidopsis thaliana] |
RefSeq | NP_195049.1 | 0 | 1 | 603 | 1 | 609 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | NP_850077.1 | 0 | 1 | 603 | 1 | 614 | pectinesterase family protein [Arabidopsis thaliana] |
Swiss-Prot | Q7Y201 | 0 | 1 | 603 | 1 | 614 | PME13_ARATH RecName: Full=Probable pectinesterase/pectinesterase inhibitor 13; Includes: RecName: Full=Pectinesterase inhibitor 13; AltName: Full=Pectin methylesterase inhibitor 13; Includes: RecName: Full=Pectinesterase 13; Short=PE 13; AltName: Full=Pectin methylesterase 13; Short=AtPME13 |
RefSeq | XP_002516193.1 | 0 | 1 | 601 | 1 | 593 | Pectinesterase-1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 285 | 600 | 3 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 290 | 602 | 4 | 317 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 2e-22 | 290 | 592 | 5 | 341 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 2e-22 | 290 | 592 | 5 | 341 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 2e-22 | 290 | 592 | 5 | 341 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |