| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra000598 |
| Family | GH116 |
| Protein Properties | Length: 919 Molecular Weight: 102381 Isoelectric Point: 5.8946 |
| Chromosome | Chromosome/Scaffold: 03 Start: 11982052 End: 11986602 |
| Description | Beta-glucosidase, GBA2 type family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH116 | 490 | 852 | 0 |
| GHFLYLEGIEYRMWNTYDVHFYASFALVMLFPKLELSIQRDFAAAVMLHDPTKVKTLSEGQWVQRKVLGAVPHDLGINDPWFEVNGYNLHNTDRWKDLNP KFVLQVYRDVVATGDKKFALAVWPSVYVAMAYMAQFDKDGDGMIENEGFPDQTYDTWSASGVSAYCGGLWVAALQAASALAREVGDKNSQDYFWSKFEKA KVVYEKKLWNGSYFNYDTSGSRYSSSIQADQLAGQWYARASGLMPIVDEDKARMALEKVYNFNVMKIKDGKRGAVNGMHPDGKVDTASMQSREIWSGVTY ALAATMIQEGLVDKAFQTASGIYEAAWSETGLSYSFQTPEAWNTNDQYRSLTYMRPLAIWSMQ | |||
| Full Sequence |
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| Protein Sequence Length: 919 Download |
| MSEENFMDNG EDVKSSATKA PVGIRLWFLV REEAAKGRLA FIDPFSKHSV TSSHGVPLGG 60 IGSGSIGRSF KGEFQRWQLF PPKCEDEPVL ANQFSAFVSR ANGKNYSSVL CPRNPKLAKQ 120 ESESGIGSWD WNMKGDKSTY HALYPRSWTI YEGEPDPELR IVCRQVSPFI PHNYKESSFP 180 VSVFTFTIHN LGDTTADATL LFTWANSVGG DSEFSGGHYN SKIMMNDGVK GVLLHHKTAN 240 GLPSLSYAIS AQETEGVSVS VCPFFTVSGK QNGITAKDVW EIIKEHGSFD HLDASEASMQ 300 SEHGSSIGAA VAASATVLPG ESRIVTFSLA WDCPEVQFPS GKIYSRRYTK FYGTHGDAAA 360 QIAYDAILGH SQWESWIEDW QRPILEDKRL PAWYPITLFN ELYYLNSGGT LWTDGSSPLH 420 SLAGVREKKF SLDKSQSGLK SIIDVPQQQN DTAVSVLEKM ASTLEQLHAS TASNSAFGTK 480 LLEEGEENIG HFLYLEGIEY RMWNTYDVHF YASFALVMLF PKLELSIQRD FAAAVMLHDP 540 TKVKTLSEGQ WVQRKVLGAV PHDLGINDPW FEVNGYNLHN TDRWKDLNPK FVLQVYRDVV 600 ATGDKKFALA VWPSVYVAMA YMAQFDKDGD GMIENEGFPD QTYDTWSASG VSAYCGGLWV 660 AALQAASALA REVGDKNSQD YFWSKFEKAK VVYEKKLWNG SYFNYDTSGS RYSSSIQADQ 720 LAGQWYARAS GLMPIVDEDK ARMALEKVYN FNVMKIKDGK RGAVNGMHPD GKVDTASMQS 780 REIWSGVTYA LAATMIQEGL VDKAFQTASG IYEAAWSETG LSYSFQTPEA WNTNDQYRSL 840 TYMRPLAIWS MQWALTRTSN NKQKQFGLEP ELEPEPSSLM KHDIGFSRVS RLLNLPNEAS 900 AKGTVQTLFE YACRRMMS* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG4354 | COG4354 | 1.0e-23 | 124 | 414 | 300 | + Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism] | ||
| pfam12215 | GBA2_N | 1.0e-57 | 55 | 376 | 330 | + beta-Glucocerebrosidase 2 N terminal. This domain is found in bacteria, archaea and eukaryotes. This domain is typically between 320 to 354 amino acids in length. This domain is found associated with pfam04685. This domain is found in the protein beta-Glucocerebrosidase 2. It is found just after the extreme N terminus. This protein is located in the ER. The N terminal is thought to be the luminal domain while the C terminal is the cytosolic domain. The catalytic domain of GBA-2 is unknown. | ||
| COG4354 | COG4354 | 1.0e-70 | 489 | 855 | 385 | + Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism] | ||
| pfam04685 | DUF608 | 2.0e-169 | 490 | 853 | 367 | + Protein of unknown function, DUF608. This family represents a conserved region with a pankaryotic distribution in a number of uncharacterized proteins. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004348 | glucosylceramidase activity |
| GO:0006665 | sphingolipid metabolic process |
| GO:0016021 | integral to membrane |
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAA97011.1 | 0 | 1 | 918 | 1 | 928 | unnamed protein product [Arabidopsis thaliana] |
| DDBJ | BAE99037.1 | 0 | 1 | 918 | 1 | 957 | hypothetical protein [Arabidopsis thaliana] |
| DDBJ | BAH19567.1 | 0 | 1 | 918 | 1 | 957 | AT5G49900 [Arabidopsis thaliana] |
| RefSeq | NP_199801.2 | 0 | 1 | 918 | 1 | 957 | catalytic/ glucosylceramidase [Arabidopsis thaliana] |
| RefSeq | XP_002528846.1 | 0 | 20 | 916 | 60 | 949 | conserved hypothetical protein [Ricinus communis] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DK488620 | 280 | 287 | 566 | 0 |
| DK470483 | 278 | 287 | 564 | 0 |
| DK477296 | 271 | 287 | 557 | 0 |
| DY292040 | 366 | 503 | 864 | 0 |
| JG703027 | 329 | 508 | 836 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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