y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra000645 |
Family | GH28 |
Protein Properties | Length: 404 Molecular Weight: 43602.7 Isoelectric Point: 8.4832 |
Chromosome | Chromosome/Scaffold: 03 Start: 12237512 End: 12239061 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 57 | 391 | 0 |
SACTRKGGNSKIYVPKGTFYLGGVQFVGPCANQIEFVIDGTLLAPSSPRDIKNDTWIQFRYINNLIISGAGTLDGQGKESWPLNDCHKNPSCPKLAMTMG FAFVNNARINGITSLNSKMGHFNFFSVHHFNITEVTITAPGDSPNTDGLKFGLCSNINISKTHIGTGDDCIAILSGTTNMDISNVNCGPGHGISVGSLGK NKEEKDVNGLTVRDIVFNGTSDGIRIKTWESSASKILVSNFVYENIQMINVGNPINIDQKYCPRPPCEKKGQSHVQIQDLKLKNIYGTSTNKVAVNLQCS KSFPCKKVELIDINLEHEGVEGGPSTAVCENVDGS |
Full Sequence |
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Protein Sequence Length: 404 Download |
MTCISSAFKA LCLSLLFLNA VASRPTNRPK VFNVQRYGAK ADGKADNTKA FTNIWISACT 60 RKGGNSKIYV PKGTFYLGGV QFVGPCANQI EFVIDGTLLA PSSPRDIKND TWIQFRYINN 120 LIISGAGTLD GQGKESWPLN DCHKNPSCPK LAMTMGFAFV NNARINGITS LNSKMGHFNF 180 FSVHHFNITE VTITAPGDSP NTDGLKFGLC SNINISKTHI GTGDDCIAIL SGTTNMDISN 240 VNCGPGHGIS VGSLGKNKEE KDVNGLTVRD IVFNGTSDGI RIKTWESSAS KILVSNFVYE 300 NIQMINVGNP INIDQKYCPR PPCEKKGQSH VQIQDLKLKN IYGTSTNKVA VNLQCSKSFP 360 CKKVELIDIN LEHEGVEGGP STAVCENVDG SARGTMVPQH CLN* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 5.0e-81 | 10 | 403 | 395 | + polygalacturonase | ||
PLN02793 | PLN02793 | 4.0e-81 | 1 | 403 | 410 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 6.0e-83 | 29 | 399 | 377 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 3.0e-92 | 63 | 388 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 7.0e-123 | 32 | 401 | 372 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_175003.1 | 0 | 1 | 403 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_175004.1 | 0 | 1 | 394 | 1 | 395 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_179147.1 | 0 | 1 | 403 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_179149.2 | 0 | 1 | 403 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_181560.1 | 0 | 1 | 403 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-19 | 110 | 357 | 100 | 349 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_B | 0.0000000000002 | 119 | 388 | 72 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_A | 0.0000000000002 | 119 | 388 | 72 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ia5_A | 0.0000000000002 | 119 | 388 | 72 | 333 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 1hg8_A | 0.0000000000005 | 169 | 344 | 111 | 304 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |