CAZyme Information

Basic Information
SpeciesBrassica rapa
Cazyme IDBra000732
FamilyCBM49
Protein PropertiesLength: 361 Molecular Weight: 39898.6 Isoelectric Point: 10.2043
ChromosomeChromosome/Scaffold: 03 Start: 12714637 End: 12716534
Descriptionglycosyl hydrolase 9C3
View CDS
External Links
NCBI Taxonomy
CAZyDB
Signature Domain  Download full data set without filtering
FamilyStartEndEvalue
CBM492683456.4e-39
  ITISQKMTSSWINEGKVYYRYSTKLTNRSTKRLKNLKISITKLYGPIWGVTKTGNSYGFPSWMKSLPAGKSMEFVYIH
GH982200
  ISWDVKYAGVQTLVAKILMQGKAGEHTAVFERYQEKAEQFMCSMLGKSTKNIQKTPGGLIFRQRWNNMQFVTSASFLAAVYSDYLSSSKRNLRCSQGNVS
  PSQLLDFSKSQVDYILGDNPRGTSYMVGYGHNYPRQVHHRGSSIVSYKVDQKFVTCRGGYATWYSRKASDPNVLTGALVGGPDAYDNFADNRDNYEQTEP
  TTYNNAPLLGVLA
Full Sequence
Protein Sequence     Length: 361     Download
MHPCKVLISW DVKYAGVQTL VAKILMQGKA GEHTAVFERY QEKAEQFMCS MLGKSTKNIQ    60
KTPGGLIFRQ RWNNMQFVTS ASFLAAVYSD YLSSSKRNLR CSQGNVSPSQ LLDFSKSQVD    120
YILGDNPRGT SYMVGYGHNY PRQVHHRGSS IVSYKVDQKF VTCRGGYATW YSRKASDPNV    180
LTGALVGGPD AYDNFADNRD NYEQTEPTTY NNAPLLGVLA RLISGPTGFD QRLPGVSPTP    240
SPVIIKPAPI PKRKPTTPPA PASSPSPITI SQKMTSSWIN EGKVYYRYST KLTNRSTKRL    300
KNLKISITKL YGPIWGVTKT GNSYGFPSWM KSLPAGKSME FVYIHSAAPA NVLVSNYSLE    360
* 
Functional Domains Download unfiltered results here
Cdd IDDomainE-ValueStartEndLengthDomain Description
pfam00759Glyco_hydro_95.0e-749220212+
PLN00119PLN001199.0e-899222214+
PLN02420PLN024208.0e-909223217+
PLN02340PLN023401.0e-1119357357+
PLN02171PLN02171010360351+
Gene Ontology
GO TermDescription
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005576extracellular region
GO:0005975carbohydrate metabolic process
GO:0030246carbohydrate binding
Annotations - NR Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
GenBankAAC35539.108360275625contains similarity to glycosyl hydrolases family 9 (Pfam: glycosyl_hydro5.hmm, score: 88.03) [Arabidopsis thaliana]
GenBankAAC78298.208359276619cellulase [Fragaria x ananassa]
RefSeqNP_192843.208360275626AtGH9C3 (Arabidopsis thaliana glycosyl hydrolase 9C3); carbohydrate binding / catalytic/ hydrolase, hydrolyzing O-glycosyl compounds
RefSeqXP_002299478.108359276621predicted protein [Populus trichocarpa]
RefSeqXP_002303645.108359276621glycosyl hydrolase family 9 [Populus trichocarpa]
Annotations - PDB Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
PDB1ksd_A3e-238224251430A Chain A, Structure And Activity Of A Flavonoid 3-O Glucosyltransferase Reveals The Basis For Plant Natural Product Modification
PDB1ksc_A3e-238224251430A Chain A, Structure And Activity Of A Flavonoid 3-O Glucosyltransferase Reveals The Basis For Plant Natural Product Modification
PDB1ks8_A3e-238224251430A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes Takasagoensis, At Ph 2.5.
PDB2xfg_A2e-2210222280459B Chain B, Reassembly And Co-Crystallization Of A Family 9 Processive Endoglucanase From Separately Expressed Gh9 And Cbm3c Modules
PDB1ia7_A1e-2159223291427B Chain B, Reassembly And Co-Crystallization Of A Family 9 Processive Endoglucanase From Separately Expressed Gh9 And Cbm3c Modules
Hydropathy
EST Download unfiltered results here
HitLengthStartEndEValue
HE640823313253370
EX659478283633450
ES90703723182380
EG487649284433260
HE640823323163470.061
Orthologous Group
SpeciesID
Aquilegia coeruleaAquca_002_01464.1.518.596Aquca_037_00141.1.542.619Aquca_013_00114.1.534.611
Arabidopsis lyrata474038.535.614489943.534.611892975.528.605
Arabidopsis thalianaAT1G64390.1.528.605AT1G48930.1.535.614AT4G11050.1.534.611
Brachypodium distachyonBradi2g32270.1.538.616Bradi2g07150.1.534.613
Brassica rapaBra032270.517.596Bra000732.268.345Bra027699.529.606Bra018765.532.611Bra027735.528.605
Carica papayaevm.model.supercontig_183.4.367.446evm.TU.contig_27379.2.529.606
Capsella rubellaCarubv10012624m.534.613Carubv10003874m.535.612Carubv10019981m.528.605
Citrus clementinaCiclev10019301m.537.614Ciclev10033912m.569.648
Citrus sinensisorange1.1g043219m.499.578orange1.1g019436m.249.326orange1.1g017562m.277.354orange1.1g011712m.387.464orange1.1g006835m.537.614
Cucumis sativusCucsa.107370.1.527.604Cucsa.128330.1.503.582Cucsa.303850.1.533.608
Eucalyptus grandisEucgr.D01733.1.529.606Eucgr.J00862.1.484.562Eucgr.E00858.1.526.602Eucgr.D01896.1
Fragaria vescamrna32087.1-v1.0-hybrid.632.709mrna11058.1-v1.0-hybrid.533.612
Glycine maxGlyma12g03050.1.537.616Glyma05g36930.1.532.609Glyma08g02610.1.533.610Glyma11g10760.1.535.614
Gossypium raimondiiGorai.003G080800.1.533.609Gorai.008G254000.1.534.611Gorai.004G133700.1.536.613Gorai.005G210200.1.530.608
Linum usitatissimumLus10003888.529.606Lus10010201.535.613Lus10032377.534.611Lus10017402.508.586Lus10001833.527.603
Lus10033956
Malus domesticaMDP0000276676.536.613MDP0000131267.528.605MDP0000548943MDP0000722052.313.390MDP0000826600.538.616
Manihot esculentacassava4.1_004404m.486.565cassava4.1_003698m.530.607
Medicago truncatulaMedtr4g074960.1.571.649
Mimulus guttatusmgv1a003302m.501.580
Oryza sativaLOC_Os01g12070.1.544.625LOC_Os01g12030.1.543.620LOC_Os04g57860.1.531.610LOC_Os05g12150.1.535.613
Panicum virgatumPavirv00000152m.548.625Pavirv00066185m.348.426Pavirv00000772m.535.612Pavirv00030375m.537.614Pavirv00029375m.528.607
Physcomitrella patensPp1s176_127V6.1.544.623
Phaseolus vulgarisPhvul.011G030300.1.567.645Phvul.002G297600.1.530.607
Picea abiesMA_895058g0010MA_10437098g0010.516.596MA_127108g0010.524.603MA_42717g0010.527.604MA_10241783g0010.543.621
MA_19509g0020.547.626
Populus trichocarpaPotri.003G139600.1.530.607Potri.001G092200.1.530.607Potri.001G092200.5.285.362Potri.007G071200.1.520.599Potri.007G071200.2.519.598
Potri.001G092200.4.375.452
Prunus persicappa002939m.528.605ppa022524m.499.578
Ricinus communis29675.m000388.528.607
Setaria italicaSi000642m.549.626Si021474m.530.607Si021476m.528.606
Selaginella moellendorffii234652.525.60399802.550.630
Sorghum bicolorSb09g006670.1.535.612Sb03g001560.1.561.639Sb06g032760.1.534.615
Thellungiella halophilaThhalv10023353m.527.604Thhalv10011318m.534.613Thhalv10028514m.535.612
Vitis viniferaGSVIVT01019523001.537.614GSVIVT01012043001.524.602
Sequence Alignments  (This image is cropped. Click for full image.)
Phylogeny  (This image is cropped. Click for full image.)