| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra000732 |
| Family | CBM49 |
| Protein Properties | Length: 361 Molecular Weight: 39898.6 Isoelectric Point: 10.2043 |
| Chromosome | Chromosome/Scaffold: 03 Start: 12714637 End: 12716534 |
| Description | glycosyl hydrolase 9C3 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM49 | 268 | 345 | 6.4e-39 |
| ITISQKMTSSWINEGKVYYRYSTKLTNRSTKRLKNLKISITKLYGPIWGVTKTGNSYGFPSWMKSLPAGKSMEFVYIH | |||
| GH9 | 8 | 220 | 0 |
| ISWDVKYAGVQTLVAKILMQGKAGEHTAVFERYQEKAEQFMCSMLGKSTKNIQKTPGGLIFRQRWNNMQFVTSASFLAAVYSDYLSSSKRNLRCSQGNVS PSQLLDFSKSQVDYILGDNPRGTSYMVGYGHNYPRQVHHRGSSIVSYKVDQKFVTCRGGYATWYSRKASDPNVLTGALVGGPDAYDNFADNRDNYEQTEP TTYNNAPLLGVLA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 361 Download |
| MHPCKVLISW DVKYAGVQTL VAKILMQGKA GEHTAVFERY QEKAEQFMCS MLGKSTKNIQ 60 KTPGGLIFRQ RWNNMQFVTS ASFLAAVYSD YLSSSKRNLR CSQGNVSPSQ LLDFSKSQVD 120 YILGDNPRGT SYMVGYGHNY PRQVHHRGSS IVSYKVDQKF VTCRGGYATW YSRKASDPNV 180 LTGALVGGPD AYDNFADNRD NYEQTEPTTY NNAPLLGVLA RLISGPTGFD QRLPGVSPTP 240 SPVIIKPAPI PKRKPTTPPA PASSPSPITI SQKMTSSWIN EGKVYYRYST KLTNRSTKRL 300 KNLKISITKL YGPIWGVTKT GNSYGFPSWM KSLPAGKSME FVYIHSAAPA NVLVSNYSLE 360 * 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00759 | Glyco_hydro_9 | 5.0e-74 | 9 | 220 | 212 | + Glycosyl hydrolase family 9. | ||
| PLN00119 | PLN00119 | 9.0e-89 | 9 | 222 | 214 | + endoglucanase | ||
| PLN02420 | PLN02420 | 8.0e-90 | 9 | 223 | 217 | + endoglucanase | ||
| PLN02340 | PLN02340 | 1.0e-111 | 9 | 357 | 357 | + endoglucanase | ||
| PLN02171 | PLN02171 | 0 | 10 | 360 | 351 | + endoglucanase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005576 | extracellular region |
| GO:0005975 | carbohydrate metabolic process |
| GO:0030246 | carbohydrate binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC35539.1 | 0 | 8 | 360 | 275 | 625 | contains similarity to glycosyl hydrolases family 9 (Pfam: glycosyl_hydro5.hmm, score: 88.03) [Arabidopsis thaliana] |
| GenBank | AAC78298.2 | 0 | 8 | 359 | 276 | 619 | cellulase [Fragaria x ananassa] |
| RefSeq | NP_192843.2 | 0 | 8 | 360 | 275 | 626 | AtGH9C3 (Arabidopsis thaliana glycosyl hydrolase 9C3); carbohydrate binding / catalytic/ hydrolase, hydrolyzing O-glycosyl compounds |
| RefSeq | XP_002299478.1 | 0 | 8 | 359 | 276 | 621 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002303645.1 | 0 | 8 | 359 | 276 | 621 | glycosyl hydrolase family 9 [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ksd_A | 3e-23 | 8 | 224 | 251 | 430 | A Chain A, Structure And Activity Of A Flavonoid 3-O Glucosyltransferase Reveals The Basis For Plant Natural Product Modification |
| PDB | 1ksc_A | 3e-23 | 8 | 224 | 251 | 430 | A Chain A, Structure And Activity Of A Flavonoid 3-O Glucosyltransferase Reveals The Basis For Plant Natural Product Modification |
| PDB | 1ks8_A | 3e-23 | 8 | 224 | 251 | 430 | A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes Takasagoensis, At Ph 2.5. |
| PDB | 2xfg_A | 2e-22 | 10 | 222 | 280 | 459 | B Chain B, Reassembly And Co-Crystallization Of A Family 9 Processive Endoglucanase From Separately Expressed Gh9 And Cbm3c Modules |
| PDB | 1ia7_A | 1e-21 | 59 | 223 | 291 | 427 | B Chain B, Reassembly And Co-Crystallization Of A Family 9 Processive Endoglucanase From Separately Expressed Gh9 And Cbm3c Modules |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HE640823 | 313 | 25 | 337 | 0 |
| EX659478 | 283 | 63 | 345 | 0 |
| ES907037 | 231 | 8 | 238 | 0 |
| EG487649 | 284 | 43 | 326 | 0 |
| HE640823 | 32 | 316 | 347 | 0.061 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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