| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra000780 |
| Family | CE8 |
| Protein Properties | Length: 358 Molecular Weight: 39605.7 Isoelectric Point: 8.3221 |
| Chromosome | Chromosome/Scaffold: 03 Start: 13071799 End: 13073160 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 44 | 340 | 0 |
| VTVSKNGFGNFSRINDAVAMAPNNSNGDEGFFHIKIMEGEYEEYINIDQNKRYLMMSGAGINRTIITGNHSYEDGWGIDVSATFIASGSHFICKHLTIRN TAGPTKGQALALMCSGDLSVFYNCSIEGYQDTLWVRSGKQFYRECDVYGTIDFIFGNAVVVLQKCNLYARRPSKGNGNEITAQGRTNPKDQSGIVIQGCA IKPTHDLARSNYTVKTYLGRPWKNYSRTIIMQTYIDGFIEPAGWDKSSGEALRTLYFAEYNNYGTGSNTTNRVTWPSYHIISATIASNFTVSSFIDG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 358 Download |
| MVRISTLYLI IIISVFSDFF ASRTAISKSI LQHDADGVKI RATVTVSKNG FGNFSRINDA 60 VAMAPNNSNG DEGFFHIKIM EGEYEEYINI DQNKRYLMMS GAGINRTIIT GNHSYEDGWG 120 IDVSATFIAS GSHFICKHLT IRNTAGPTKG QALALMCSGD LSVFYNCSIE GYQDTLWVRS 180 GKQFYRECDV YGTIDFIFGN AVVVLQKCNL YARRPSKGNG NEITAQGRTN PKDQSGIVIQ 240 GCAIKPTHDL ARSNYTVKTY LGRPWKNYSR TIIMQTYIDG FIEPAGWDKS SGEALRTLYF 300 AEYNNYGTGS NTTNRVTWPS YHIISATIAS NFTVSSFIDG DSWIPQTKVP YIGGLVP* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02301 | PLN02301 | 3.0e-103 | 11 | 355 | 347 | + pectinesterase/pectinesterase inhibitor | ||
| PLN02416 | PLN02416 | 2.0e-106 | 30 | 355 | 328 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN03043 | PLN03043 | 8.0e-128 | 36 | 356 | 322 | + Probable pectinesterase/pectinesterase inhibitor; Provisional | ||
| pfam01095 | Pectinesterase | 6.0e-136 | 44 | 341 | 300 | + Pectinesterase. | ||
| PLN02713 | PLN02713 | 1.0e-164 | 30 | 356 | 328 | + Probable pectinesterase/pectinesterase inhibitor | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK84428.1 | 0 | 28 | 356 | 232 | 561 | papillar cell-specific pectin methylesterase-like protein [Brassica napus] |
| GenBank | AAL24207.1 | 0 | 24 | 356 | 11 | 344 | At2g47550/T30B22.15 [Arabidopsis thaliana] |
| GenBank | AAO11616.1 | 0 | 24 | 356 | 11 | 344 | At2g47550/T30B22.15 [Arabidopsis thaliana] |
| DDBJ | BAF42040.1 | 0 | 28 | 356 | 235 | 564 | pectin methylesterase 3 [Pyrus communis] |
| RefSeq | NP_566103.1 | 0 | 24 | 356 | 226 | 559 | pectinesterase family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1xg2_A | 0 | 40 | 355 | 1 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1gq8_A | 0 | 44 | 355 | 9 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1qjv_B | 1e-23 | 42 | 310 | 6 | 311 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 1e-23 | 42 | 310 | 6 | 311 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 2ntq_B | 1e-23 | 42 | 310 | 6 | 311 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
