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Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra000911 |
Family | GH28 |
Protein Properties | Length: 487 Molecular Weight: 53243.6 Isoelectric Point: 5.3586 |
Chromosome | Chromosome/Scaffold: 03 Start: 13865733 End: 13867986 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 112 | 442 | 0 |
DEDNNTVSILLVPFGFTFVIHSTIFTGPCRSYQYFQVDGTIVPRDGPESWPSGFNKRQWLVFYRIKGMALIGNGVIDGRGQKWWDLPCKPHRNVNKTTAL TGPCESPAALRFFMSSNLSMQGVTIKNSPQFHMTFDGCHEVHINSLRITSPPSSPNTDGIHIENSNSVEIHNSVISNGDDCVSIGSGSYNIDILNLTCGP GGHGISIGSLGNQNSRACVSNITVRDSFIKFSDNGVRIKTWQGGSGSVSGVTFDNIQMDNVRNPIIIDQYYCTSKNCPNKTNAVFVNDVVYQSIKGTYDR RSPPMHFGCSNNVPCVNLTLSDIDLVPSKGE |
Full Sequence |
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Protein Sequence Length: 487 Download |
MLKISRDPFL RFTTLILITS SLFSYGTEAR LHYYNDIHNP NSYPEPPYSS FSQSQPPSIS 60 PDPDDLSQPP SPCQDLDQEV VHDVRNYGAI GDGITDDTDA FKTAWDSACS NDEDNNTVSI 120 LLVPFGFTFV IHSTIFTGPC RSYQYFQVDG TIVPRDGPES WPSGFNKRQW LVFYRIKGMA 180 LIGNGVIDGR GQKWWDLPCK PHRNVNKTTA LTGPCESPAA LRFFMSSNLS MQGVTIKNSP 240 QFHMTFDGCH EVHINSLRIT SPPSSPNTDG IHIENSNSVE IHNSVISNGD DCVSIGSGSY 300 NIDILNLTCG PGGHGISIGS LGNQNSRACV SNITVRDSFI KFSDNGVRIK TWQGGSGSVS 360 GVTFDNIQMD NVRNPIIIDQ YYCTSKNCPN KTNAVFVNDV VYQSIKGTYD RRSPPMHFGC 420 SNNVPCVNLT LSDIDLVPSK GEMVVDPFCW NAYGVVDELS VPSISCLKSN PSTLLLGGLL 480 GECGAR* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 3.0e-73 | 83 | 452 | 373 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 2.0e-74 | 101 | 471 | 378 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 4.0e-88 | 101 | 461 | 364 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 1.0e-90 | 117 | 437 | 321 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 2.0e-106 | 101 | 472 | 374 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD22651.1 | 0 | 1 | 485 | 1 | 451 | AC007138_15 putative polygalacturonidase [Arabidopsis thaliana] |
RefSeq | NP_192098.2 | 0 | 1 | 485 | 1 | 467 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_563654.1 | 0 | 77 | 485 | 84 | 490 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002320271.1 | 0 | 81 | 467 | 42 | 422 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515219.1 | 0 | 81 | 475 | 141 | 530 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 5e-28 | 148 | 440 | 40 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 5e-28 | 148 | 440 | 40 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 5e-28 | 148 | 440 | 40 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 5e-28 | 148 | 440 | 40 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 5e-28 | 148 | 440 | 40 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DW479564 | 316 | 101 | 416 | 0 |
EV124391 | 244 | 207 | 450 | 0 |
DR450143 | 295 | 131 | 425 | 0 |
CX663441 | 272 | 197 | 468 | 0 |
DV135481 | 283 | 101 | 383 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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