Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra001011 |
Family | PL1 |
Protein Properties | Length: 472 Molecular Weight: 53627.9 Isoelectric Point: 9.6717 |
Chromosome | Chromosome/Scaffold: 03 Start: 14384592 End: 14386558 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 182 | 388 | 0 |
VIQNEPLWIIFKHDMSIRLSQELMINSHKTIDARGTNVHIAYGAGITMQYVRNIIIHGLHVHHIVPGSGGMIRNSNDHFGFRGQADGDGISLFGATNIWL DHISMSKCQDGLIDAIMGSPGITLSNSHFTHHNDVMLLGAQNDNHADKKMQVTVAFNHFGKGLVQRMPRIRWGFVHVVNNDYTHWELYAIGGSQSPTILS HGNRFIA |
Full Sequence |
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Protein Sequence Length: 472 Download |
METARLFKLV CVICIASLIP TLRANVAETD DYWVKMANEA RKRTLMAYHP DPYQIVDHFH 60 ERHYDNSTDV EETEEHASEE EDDIEMSSSL TNSTRRSLRG RGKGKGRGKW SKLKGPCTAS 120 NPIDKCWRCQ PDWARRRKKL VKCVRGFGYR TTGGKRGRIY VVTSNRDDDT VNPRPGTLRH 180 AVIQNEPLWI IFKHDMSIRL SQELMINSHK TIDARGTNVH IAYGAGITMQ YVRNIIIHGL 240 HVHHIVPGSG GMIRNSNDHF GFRGQADGDG ISLFGATNIW LDHISMSKCQ DGLIDAIMGS 300 PGITLSNSHF THHNDVMLLG AQNDNHADKK MQVTVAFNHF GKGLVQRMPR IRWGFVHVVN 360 NDYTHWELYA IGGSQSPTIL SHGNRFIAPP HLQHYREVTK RDYAPESEWK NWNWRSDKDI 420 FMNNAYFRQS GNPKFMCSHS RQQMIKPKHG SAVSTLTKYA GALDCRVGKP C* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 7.0e-16 | 25 | 68 | 44 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 2.0e-25 | 151 | 386 | 254 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 4.0e-56 | 202 | 386 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-64 | 195 | 390 | 207 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAM60924.1 | 0 | 1 | 471 | 1 | 475 | putative pectate lyase [Arabidopsis thaliana] |
GenBank | ABK28696.1 | 0 | 1 | 471 | 1 | 472 | unknown [Arabidopsis thaliana] |
RefSeq | NP_186776.1 | 0 | 1 | 471 | 1 | 475 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | NP_197015.4 | 0 | 1 | 471 | 1 | 472 | lyase/ pectate lyase [Arabidopsis thaliana] |
Swiss-Prot | Q9LFP5 | 0 | 1 | 471 | 1 | 472 | PEL19_ARATH RecName: Full=Putative pectate lyase 19; Flags: Precursor |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 121 | 463 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 121 | 463 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 0.00000000000001 | 190 | 388 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pcl_A | 0.000000000005 | 202 | 386 | 74 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
PDB | 1vbl_A | 0.00000000003 | 204 | 386 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |