| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra001157 |
| Family | CE8 |
| Protein Properties | Length: 444 Molecular Weight: 45826.7 Isoelectric Point: 7.4026 |
| Chromosome | Chromosome/Scaffold: 03 Start: 15010595 End: 15012097 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 2 | 248 | 0 |
| THLVFLGDGPEKTIISGSKNYKDGITTYRTQTVAIIGDSFIAKNIGFVNTAGPAKFQAVAVRVQSDESIFFNCRFDGYQDTLYAHSHRQFYRDCTISGTI DFLFGDAAAVFQNCTLLVRKPLPNQACPITAHGRSDAREATGFVFQGCTIAGEPDYLAVKATSKAYLGRPWREFSRTIIMNSFLPDFVQPQGWMPWMGNF GLDTLFYSEAQNTGPGAGLANRVTWAGIKKLSNEEILKFTPDQFIQG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 444 Download |
| MTHLVFLGDG PEKTIISGSK NYKDGITTYR TQTVAIIGDS FIAKNIGFVN TAGPAKFQAV 60 AVRVQSDESI FFNCRFDGYQ DTLYAHSHRQ FYRDCTISGT IDFLFGDAAA VFQNCTLLVR 120 KPLPNQACPI TAHGRSDARE ATGFVFQGCT IAGEPDYLAV KATSKAYLGR PWREFSRTII 180 MNSFLPDFVQ PQGWMPWMGN FGLDTLFYSE AQNTGPGAGL ANRVTWAGIK KLSNEEILKF 240 TPDQFIQGGI WVPGKGVPYT PGLLAANPNA ATTAPSGSAA SGTPSVTDTS GAGSVSPSAA 300 PVSQVATPVS PAVAPVSPAA APEGSLKMAS TETNGAGSVS PAAAPQGSIR MASGASSVSP 360 AAAPEGSIRM ASMERPGAGS VSPVAAPESS IRMASMERPG AGSVSPAATP EGSIKMASSV 420 TSGAAAPVYP PPPPFYPDIA LSN* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02745 | PLN02745 | 5.0e-124 | 1 | 258 | 258 | + Putative pectinesterase/pectinesterase inhibitor | ||
| PLN02990 | PLN02990 | 5.0e-124 | 1 | 260 | 261 | + Probable pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 4.0e-159 | 1 | 248 | 249 | + Pectinesterase. | ||
| PLN02217 | PLN02217 | 1.0e-175 | 1 | 262 | 262 | + probable pectinesterase/pectinesterase inhibitor | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAC42986.1 | 0 | 1 | 401 | 303 | 663 | putative pectinesterase [Arabidopsis thaliana] |
| RefSeq | NP_187212.1 | 0 | 1 | 401 | 303 | 663 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | NP_198139.1 | 0 | 1 | 301 | 300 | 599 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | NP_199729.1 | 0 | 1 | 259 | 307 | 566 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002314364.1 | 0 | 2 | 266 | 307 | 571 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 3 | 263 | 58 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0 | 3 | 263 | 54 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1qjv_B | 0.000000000000003 | 58 | 253 | 129 | 339 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 0.000000000000003 | 58 | 253 | 129 | 339 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 2ntq_B | 0.000000000000004 | 58 | 173 | 129 | 246 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| ES268507 | 247 | 5 | 251 | 0 |
| EX050674 | 251 | 1 | 251 | 0 |
| ES983961 | 217 | 46 | 262 | 0 |
| GR459701 | 211 | 1 | 211 | 0 |
| EV156298 | 211 | 1 | 211 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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