| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra001215 |
| Family | GH28 |
| Protein Properties | Length: 450 Molecular Weight: 48151.3 Isoelectric Point: 6.7488 |
| Chromosome | Chromosome/Scaffold: 03 Start: 15373855 End: 15376134 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 75 | 423 | 0 |
| KGGAQLYVPPGKWLTGSFSLTSHLTLFLENGAVIVASQDPSHWGVVEPLPSYGRGIDLPGKRYKSLISGHMLHDVIITGDNGTIDGQGLVWWDRFTSHSL KYNRPHLVEFISSQDITISNVTFLNAPCYTVHAIYSSHVYIDKILAHSSPGSPYTIGIVPDSSDNVCIQNSTINMGYDAISLKSGWDEYGISYSRPTENV HIRNVNLQAASGSSISFGSEMSGGISHVVVDNAFIRNSLTGIAFRTTKGRGGYIREIDVSNIDMWRIGTAIVANGSFGSHPDDKFDANALPIVNGIRLSN VSGVDIGVAGELFGIKESPFRSVALYNVSLLMSSGSSSSDGSWSCSYVY | |||
| Full Sequence |
|---|
| Protein Sequence Length: 450 Download |
| MSGALILVLA LTSLIPVYAK THGAGRICDE LGGRSLSTRP HSVSIAEFGA VGDGKTLNTL 60 AFQNAVFYLM SFADKGGAQL YVPPGKWLTG SFSLTSHLTL FLENGAVIVA SQDPSHWGVV 120 EPLPSYGRGI DLPGKRYKSL ISGHMLHDVI ITGDNGTIDG QGLVWWDRFT SHSLKYNRPH 180 LVEFISSQDI TISNVTFLNA PCYTVHAIYS SHVYIDKILA HSSPGSPYTI GIVPDSSDNV 240 CIQNSTINMG YDAISLKSGW DEYGISYSRP TENVHIRNVN LQAASGSSIS FGSEMSGGIS 300 HVVVDNAFIR NSLTGIAFRT TKGRGGYIRE IDVSNIDMWR IGTAIVANGS FGSHPDDKFD 360 ANALPIVNGI RLSNVSGVDI GVAGELFGIK ESPFRSVALY NVSLLMSSGS SSSDGSWSCS 420 YVYGSSKLVT PEPCPELMRV NNGYGRATF* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 4.0e-13 | 35 | 434 | 426 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 4.0e-14 | 40 | 346 | 325 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 6.0e-15 | 38 | 358 | 323 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-15 | 148 | 346 | 202 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 5.0e-32 | 43 | 355 | 336 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM65366.1 | 0 | 70 | 447 | 1 | 375 | polygalacturonase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_001032043.1 | 0 | 15 | 447 | 15 | 444 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_566292.1 | 0 | 70 | 447 | 1 | 375 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_680409.1 | 0 | 15 | 447 | 17 | 446 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_850525.1 | 0 | 1 | 447 | 1 | 444 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 8e-26 | 41 | 377 | 26 | 383 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 8e-26 | 41 | 377 | 26 | 383 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 8e-26 | 41 | 377 | 26 | 383 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 8e-26 | 41 | 377 | 26 | 383 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 0.000000000000002 | 87 | 422 | 52 | 372 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
