| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra001245 |
| Family | CBM43 |
| Protein Properties | Length: 567 Molecular Weight: 62015.6 Isoelectric Point: 7.0713 |
| Chromosome | Chromosome/Scaffold: 03 Start: 15495897 End: 15498699 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM43 | 371 | 450 | 7.3e-26 |
| WCVVAKGANWTQLGEALSYACSQGNNTCDPIKSGGPCHKPDLTVLHASYAFSSYWASFRKTGGTCSFNGLATQTIKDPSK | |||
| GH17 | 25 | 345 | 0 |
| GVNYGQLGDNLPSPSDSVKLIQSLNAKRVKLYDANPAILAALNATDITVSVMDPNELLVNISKSSSLSDEWITSNILPFHPTTKIRYLLVGNEILSSTDS ELKSALVPAMRKIQRSLKKLGVKKVKVGTTLAVDVLETSFPPSSGEFRSDISGSVMKPMLQFLNRTKSFLFVDVYPYFPWAQDPAHVDLAYALFESTNVT VTDPATNLTYHNLFDQMIDAFVFATSRLGYPDLRIWVAETGWPNNGDYDQIGANVYNAATYNRNVVKKLSAVPPVGTPARPGKVLPSFIFALFNENQKTG PGTERHFGLLHPNGSRVYEIE | |||
| Full Sequence |
|---|
| Protein Sequence Length: 567 Download |
| MSVLHLLTLF LLVAVSGAKF SGRPGVNYGQ LGDNLPSPSD SVKLIQSLNA KRVKLYDANP 60 AILAALNATD ITVSVMDPNE LLVNISKSSS LSDEWITSNI LPFHPTTKIR YLLVGNEILS 120 STDSELKSAL VPAMRKIQRS LKKLGVKKVK VGTTLAVDVL ETSFPPSSGE FRSDISGSVM 180 KPMLQFLNRT KSFLFVDVYP YFPWAQDPAH VDLAYALFES TNVTVTDPAT NLTYHNLFDQ 240 MIDAFVFATS RLGYPDLRIW VAETGWPNNG DYDQIGANVY NAATYNRNVV KKLSAVPPVG 300 TPARPGKVLP SFIFALFNEN QKTGPGTERH FGLLHPNGSR VYEIELSGET TEFKEKLPAP 360 ENNEVYKGKI WCVVAKGANW TQLGEALSYA CSQGNNTCDP IKSGGPCHKP DLTVLHASYA 420 FSSYWASFRK TGGTCSFNGL ATQTIKDPSK LWTLRVSERD TVTTNELRQC REDIGLGGKT 480 AHDDLLESTW QQKKHAVPFV VLAGSHKLCP LYPPNPEVLL NELRSPSELL DFGEFSDCLD 540 FGLGSGSPLL QVVNPTFDSV GPTKPC* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam01008 | IF-2B | 0.0003 | 493 | 562 | 70 | + Initiation factor 2 subunit family. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes, initiation factor 2B subunits 1 and 2 from archaebacteria and some proteins of unknown function from prokaryotes. Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. Members of this family have also been characterized as 5-methylthioribose- 1-phosphate isomerases, an enzyme of the methionine salvage pathway. The crystal structure of Ypr118w, a non-essential, low-copy number gene product from Saccharomyces cerevisiae, reveals a dimeric protein with two domains and a putative active site cleft. | ||
| COG1184 | GCD2 | 2.0e-6 | 493 | 558 | 66 | + Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis] | ||
| pfam07983 | X8 | 4.0e-11 | 371 | 442 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 6.0e-22 | 371 | 449 | 79 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 3.0e-103 | 25 | 344 | 321 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF20214.1 | 0 | 13 | 449 | 14 | 429 | AC012395_1 putative beta-1,3-glucanase precursor [Arabidopsis thaliana] |
| GenBank | AAM65039.1 | 0 | 13 | 449 | 14 | 449 | putative glucan endo-1-3-beta-glucosidase [Arabidopsis thaliana] |
| EMBL | CBI39470.1 | 0 | 6 | 449 | 11 | 456 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_683538.1 | 0 | 13 | 449 | 14 | 449 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | XP_002334812.1 | 0 | 1 | 449 | 4 | 454 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2cyg_A | 0 | 25 | 346 | 2 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 1ghs_B | 0 | 25 | 346 | 2 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1ghs_A | 0 | 25 | 346 | 2 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1ghr_A | 0 | 25 | 346 | 2 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1aq0_B | 0 | 25 | 346 | 2 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
