| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra001268 |
| Family | GH28 |
| Protein Properties | Length: 396 Molecular Weight: 42443.4 Isoelectric Point: 8.0433 |
| Chromosome | Chromosome/Scaffold: 03 Start: 15580765 End: 15582148 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 44 | 376 | 0 |
| TTACQSPTPSRVVIPKGEFKLGEIQMRGPCKAPVEITIQGTVKADGNAIQGKDTWIVFGNINGFKLNGGGAFDGEGNAAWRVNNCHQTFNCKKLPISIRF DFVENAEIRDISSIDAKNFHINVLGAKNMTMDHINIIAPKDSPNTDGIHLGRSDGVKILNTFISTGDDCISVGDGMKNLHVEKVTCGPGHGISVGSLGRY GNEQDVSGIRVINCTLQQTDNGLRIKTWPSAACSTTASDIHFENIILKNVMNPILIDQEYCPWNQCNKQKPSTIKLANISFKQIRGTSGNKDAVKLLCSR GYPCQNVEIGDIDIRYSGADGPATFQCSNVSPK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 396 Download |
| MGAYFGAFTV FIFCLLGFSA NAVYITIGSS PGSDITQALL KAFTTACQSP TPSRVVIPKG 60 EFKLGEIQMR GPCKAPVEIT IQGTVKADGN AIQGKDTWIV FGNINGFKLN GGGAFDGEGN 120 AAWRVNNCHQ TFNCKKLPIS IRFDFVENAE IRDISSIDAK NFHINVLGAK NMTMDHINII 180 APKDSPNTDG IHLGRSDGVK ILNTFISTGD DCISVGDGMK NLHVEKVTCG PGHGISVGSL 240 GRYGNEQDVS GIRVINCTLQ QTDNGLRIKT WPSAACSTTA SDIHFENIIL KNVMNPILID 300 QEYCPWNQCN KQKPSTIKLA NISFKQIRGT SGNKDAVKLL CSRGYPCQNV EIGDIDIRYS 360 GADGPATFQC SNVSPKLMGT QSPKACSGPV TNLPQ* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 1.0e-75 | 33 | 384 | 359 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 8.0e-80 | 33 | 386 | 360 | + Probable polygalacturonase | ||
| PLN02155 | PLN02155 | 5.0e-80 | 8 | 386 | 385 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-125 | 47 | 373 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 1.0e-125 | 33 | 386 | 354 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABG38468.1 | 0 | 1 | 395 | 1 | 395 | pollen-expressed protein MF9c [Brassica oleracea] |
| GenBank | ABL63521.1 | 0 | 1 | 395 | 1 | 395 | pollen-specific protein MF9l [Brassica oleracea var. alboglabra] |
| GenBank | ABN13878.1 | 0 | 1 | 395 | 1 | 395 | polygalacturonase [Brassica rapa subsp. campestris] |
| EMBL | CAA05892.1 | 0 | 1 | 389 | 1 | 389 | polygalacturonase [Arabidopsis thaliana] |
| RefSeq | NP_187439.1 | 0 | 1 | 389 | 1 | 389 | polygalacturonase 3 (PGA3) / pectinase [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 0.00000000000005 | 93 | 339 | 97 | 343 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 0.0000000000002 | 112 | 373 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.0000000000002 | 112 | 373 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.0000000000002 | 112 | 373 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 0.0000000000002 | 112 | 373 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
