| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra001270 |
| Family | GH28 |
| Protein Properties | Length: 422 Molecular Weight: 45068.1 Isoelectric Point: 9.6884 |
| Chromosome | Chromosome/Scaffold: 03 Start: 15590061 End: 15592062 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 69 | 403 | 0 |
| KKACESKSPSKIKVRKGKYLVKTLEFKGPCKSAVTFEMDGHIMAPSKATPGKPHCGWINFEKLENFNLNGHGAIFDGQGAHAWKINDCAKTGKCNTLPIN IRITGLTNSKIKGIKSTNSKLFHMNIINCKNLTLEDIGIDAPPESLNTDGIHIGRSDGVRLVRAKIKTGDDCISIGDGTENFLVENVECGPGHGIAIGSL GKYPNEQPVRGVTIRRSLIKNTDNGVRIKTWPGSPPGIVSNILFQDITMDNVSLPILIDQVYCPHGHCKKGGPSKVKLSDITYRDIKGTSASKVAVKLLC SPGVPCTNVTLSNIDFVYTGKKGPAVSACSDVKPK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 422 Download |
| MVGLRRAKTL LFIVLVVMAT TIANGAKMLT ENDKDEPSKG SGETIDVKAS GAKGDGKTDD 60 SKAFADAWKK ACESKSPSKI KVRKGKYLVK TLEFKGPCKS AVTFEMDGHI MAPSKATPGK 120 PHCGWINFEK LENFNLNGHG AIFDGQGAHA WKINDCAKTG KCNTLPINIR ITGLTNSKIK 180 GIKSTNSKLF HMNIINCKNL TLEDIGIDAP PESLNTDGIH IGRSDGVRLV RAKIKTGDDC 240 ISIGDGTENF LVENVECGPG HGIAIGSLGK YPNEQPVRGV TIRRSLIKNT DNGVRIKTWP 300 GSPPGIVSNI LFQDITMDNV SLPILIDQVY CPHGHCKKGG PSKVKLSDIT YRDIKGTSAS 360 KVAVKLLCSP GVPCTNVTLS NIDFVYTGKK GPAVSACSDV KPKLKGKMEP PACTEKAKPD 420 S* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 2.0e-85 | 35 | 410 | 380 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 1.0e-87 | 51 | 413 | 371 | + Probable polygalacturonase | ||
| PLN02155 | PLN02155 | 6.0e-92 | 38 | 416 | 382 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-110 | 72 | 401 | 330 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 5.0e-125 | 2 | 414 | 414 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAL32525.1 | 0 | 1 | 419 | 1 | 443 | polygalacturonase; pectinase [Arabidopsis thaliana] |
| EMBL | CAA11160.1 | 0 | 1 | 419 | 1 | 443 | polygalacturonase [Arabidopsis thaliana] |
| EMBL | CAA51033.1 | 0 | 1 | 419 | 1 | 442 | exopolygalacturonase [Arabidopsis thaliana] |
| EMBL | CAA51692.1 | 0 | 1 | 419 | 1 | 443 | exopolygalacturonase [Arabidopsis thaliana] |
| RefSeq | NP_188020.1 | 0 | 1 | 419 | 1 | 443 | exopolygalacturonase / galacturan 1,4-alpha-galacturonidase / pectinase [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2iq7_G | 4e-24 | 100 | 390 | 30 | 324 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 4e-24 | 100 | 390 | 30 | 324 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 4e-24 | 100 | 390 | 30 | 324 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 4e-24 | 100 | 390 | 30 | 324 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_C | 4e-24 | 100 | 390 | 30 | 324 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
