| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra001375 |
| Family | CE8 |
| Protein Properties | Length: 560 Molecular Weight: 61680.7 Isoelectric Point: 9.9836 |
| Chromosome | Chromosome/Scaffold: 03 Start: 16063325 End: 16065960 |
| Description | root hair specific 12 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 253 | 544 | 0 |
| DIVVAKDGSGKYRTIRRALKDVPEKSKKRTVIYVKKGVYFENVKVEKSMWNVVVVGDGESKSIVSGRLNVVDGTPTFQSATFAVFGKGFMARDMAFINTA GPSKHQAVALMVSADLTAFYRCTMNAYQDTLYVHAQRQYYRDCTIIGTVDFIFGNAASVLQNCKILPRRPMKGQKNTITAQGRKDPNQNTGISIHRCTIS PLGDLTGVQTFLGRPWKNFSTTVIMDSSLHRFIDPKGWLPWVGDSAPDTIFYGEYKNFGAGASTKNRVKWKGLRFLSKKEATRFTVKPFIDG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 560 Download |
| MLSTYGKVDE REHAMLEARR KSRKRIAIIA VSLVVLAGIV LGAVFGTMAN KKSTTAETNV 60 NGDSISVSVK AVCDVTLHKE KCLETVGAAP NASSLNPEQL FIYAVKITIA EVSKARNAFS 120 SSGDNTTMSA CVELLDLTVD NLNNTLTSSE HGDVTLPELV EDLRTWLSSA ETYQDTCVET 180 LSEFNDQESK TFGESQLKNA TEMTSNALAI ITWLGKIADS FKLRRRLLSA DVAVDFNVGR 240 RLLQSTDLRK VADIVVAKDG SGKYRTIRRA LKDVPEKSKK RTVIYVKKGV YFENVKVEKS 300 MWNVVVVGDG ESKSIVSGRL NVVDGTPTFQ SATFAVFGKG FMARDMAFIN TAGPSKHQAV 360 ALMVSADLTA FYRCTMNAYQ DTLYVHAQRQ YYRDCTIIGT VDFIFGNAAS VLQNCKILPR 420 RPMKGQKNTI TAQGRKDPNQ NTGISIHRCT ISPLGDLTGV QTFLGRPWKN FSTTVIMDSS 480 LHRFIDPKGW LPWVGDSAPD TIFYGEYKNF GAGASTKNRV KWKGLRFLSK KEATRFTVKP 540 FIDGGRWLPT TKVPFRSGL* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02484 | PLN02484 | 4.0e-148 | 68 | 559 | 518 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02301 | PLN02301 | 2.0e-148 | 162 | 559 | 405 | + pectinesterase/pectinesterase inhibitor | ||
| PLN02468 | PLN02468 | 0 | 2 | 559 | 571 | + putative pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 0 | 253 | 544 | 297 | + Pectinesterase. | ||
| PLN02314 | PLN02314 | 0 | 46 | 559 | 543 | + pectinesterase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAO42295.1 | 0 | 2 | 557 | 1 | 562 | unknown protein [Arabidopsis thaliana] |
| RefSeq | NP_187682.1 | 0 | 1 | 559 | 1 | 561 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | NP_196115.1 | 0 | 2 | 557 | 1 | 562 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002316458.1 | 0 | 2 | 559 | 4 | 569 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002515781.1 | 0 | 5 | 559 | 7 | 573 | Pectinesterase-3 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 253 | 559 | 8 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0 | 251 | 559 | 2 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1qjv_B | 1e-19 | 255 | 550 | 7 | 340 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 1e-19 | 255 | 550 | 7 | 340 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 2ntq_B | 1e-19 | 255 | 550 | 7 | 340 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
