| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra001376 |
| Family | GH51 |
| Protein Properties | Length: 550 Molecular Weight: 60320.9 Isoelectric Point: 4.8892 |
| Chromosome | Chromosome/Scaffold: 03 Start: 16066612 End: 16070370 |
| Description | alpha-L-arabinofuranosidase 1 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH51 | 315 | 528 | 1.3e-34 |
| SLFSMYHQFDGTSRKGPKAFVSEYAVTGKDAGTGSLLAALAEAAFLIGLEKNSDIVEMASYAPLFVNTNDRRWNPDAIVFNSSHLYGTPSFWVQRFFAES SGSTLLSSELKGNSSSIVASAISWKNSSQDYIRIKAVNFGDSSVNLKVLVTGLDPNVMKVSGSTRTVLTSTNVMDENSFTQPEKVVPQESLLEMAEEDLT VVLPPHSFSSFDLL | |||
| Full Sequence |
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| Protein Sequence Length: 550 Download |
| MDSESWKLLR SVCILSFLLG SFSVYQSLHA VVAAQEQQDT QPAVTLQVNA SNVAGRLIPD 60 TLFGIFFEEI NHAGAGGLWA ELVSNRGFEA GGQNTPSNIW PWSIVGDQSS VYVATDRSSP 120 FERNKIALRM DVICDGNGCP SGGVGVYNPG YWGMNIEEGM KYKVAFYVRS SDDIDLSVSL 180 TSSNGSLTLA SEKIIASASD VSKWTKKEVL LEAKGTDHGA RLQLTTTKKG SLWIDQVSAM 240 PVDTYKFIHS LLLWIFVELG GCFVEGEWLS NAFRWKETVG PWEERPGHFG DVWKYWTDDG 300 LGHFEFFQIY TSASSLFSMY HQFDGTSRKG PKAFVSEYAV TGKDAGTGSL LAALAEAAFL 360 IGLEKNSDIV EMASYAPLFV NTNDRRWNPD AIVFNSSHLY GTPSFWVQRF FAESSGSTLL 420 SSELKGNSSS IVASAISWKN SSQDYIRIKA VNFGDSSVNL KVLVTGLDPN VMKVSGSTRT 480 VLTSTNVMDE NSFTQPEKVV PQESLLEMAE EDLTVVLPPH SFSSFDLLKE PAKIRKPVSD 540 SSYQKTSTM* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3534 | AbfA | 6.0e-5 | 260 | 308 | 49 | + Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism] | ||
| pfam06964 | Alpha-L-AF_C | 3.0e-31 | 364 | 521 | 168 | + Alpha-L-arabinofuranosidase C-terminus. This family represents the C-terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (EC:3.2.1.55). This catalyzes the hydrolysis of nonreducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. | ||
| smart00813 | Alpha-L-AF_C | 7.0e-38 | 364 | 521 | 166 | + Alpha-L-arabinofuranosidase C-terminus. This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase. This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0046373 | L-arabinose metabolic process |
| GO:0046556 | alpha-N-arabinofuranosidase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK50089.1 | 0 | 1 | 309 | 1 | 316 | AF372949_1 AT3g10740/T7M13_18 [Arabidopsis thaliana] |
| GenBank | AAO92261.1 | 0 | 1 | 309 | 1 | 316 | alpha-L-arabinofuranosidase [Arabidopsis thaliana] |
| GenBank | AAO92261.1 | 0 | 307 | 549 | 435 | 678 | alpha-L-arabinofuranosidase [Arabidopsis thaliana] |
| RefSeq | NP_187685.1 | 0 | 1 | 309 | 1 | 316 | ASD1 (ALPHA-L-ARABINOFURANOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, acting on glycosyl bonds / xylan 1,4-beta-xylosidase [Arabidopsis thaliana] |
| RefSeq | NP_187685.1 | 0 | 307 | 549 | 435 | 678 | ASD1 (ALPHA-L-ARABINOFURANOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, acting on glycosyl bonds / xylan 1,4-beta-xylosidase [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2vrq_C | 0.001 | 349 | 527 | 319 | 493 | A Chain A, Structure Of An Inactive Mutant Of Arabinofuranosidase From Thermobacillus Xylanilyticus In Complex With A Pentasaccharide |
| PDB | 2vrq_B | 0.001 | 349 | 527 | 319 | 493 | A Chain A, Structure Of An Inactive Mutant Of Arabinofuranosidase From Thermobacillus Xylanilyticus In Complex With A Pentasaccharide |
| PDB | 2vrq_A | 0.001 | 349 | 527 | 319 | 493 | A Chain A, Structure Of An Inactive Mutant Of Arabinofuranosidase From Thermobacillus Xylanilyticus In Complex With A Pentasaccharide |
| PDB | 2vrk_C | 0.001 | 349 | 527 | 319 | 493 | A Chain A, Structure Of A Seleno-Methionyl Derivative Of Wild Type Arabinofuranosidase From Thermobacillus Xylanilyticus |
| PDB | 2vrk_B | 0.001 | 349 | 527 | 319 | 493 | A Chain A, Structure Of A Seleno-Methionyl Derivative Of Wild Type Arabinofuranosidase From Thermobacillus Xylanilyticus |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| BX841311 | 344 | 1 | 323 | 0 |
| DK491000 | 209 | 1 | 209 | 0 |
| DK504680 | 247 | 1 | 246 | 0 |
| DK492149 | 276 | 1 | 265 | 0 |
| DK460583 | 247 | 1 | 246 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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