| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra001408 |
| Family | GT41 |
| Protein Properties | Length: 901 Molecular Weight: 100085 Isoelectric Point: 5.7651 |
| Chromosome | Chromosome/Scaffold: 03 Start: 16236758 End: 16240686 |
| Description | Tetratricopeptide repeat (TPR)-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT41 | 351 | 843 | 0 |
| PNFAQSLNNLGVVYTVQGKMDAAADTIEKAILANPTYAEAFNNLGVLYRDAGNITAAIDAYEECLKIDQDSRNAGQNRLLAMNYINEGLDDKLYEAHRDW GWRFTRLHPQYTSWDNVKDPERPITIGYISPDFFTHSVSYFIEAPLTHHDYTKYRVVVYSAVVKADAKTFRFRDKVLKKGGVWKDIYGIDEKKIASMVRD DEIDILVELTGHTANNKLGTMACRPAPVQVTWIGYPNTTGLPTVDYRITDSLADPLDTKQKQVEELVRLPDCFLCYTPSPEAGPVCPTPALSNGFVTFGS FNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCSDSIRQRFLTTLEQLGLESKRVDLLPLILFNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVP CVTMAGSVHAHNVGVSLLSNVGLGRLVAKNEDEYVRLSVDLASDVTALSKLRMSLRDLMAGSPVCNGPSFAVALESAYRSMWRSYCKGEVPSL | |||
| Full Sequence |
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| Protein Sequence Length: 901 Download |
| MVVLEDNTER ERSPPLVENG FANGPKAIQG NGNDNDTLSY ANVLRARNKF SDALSLYETL 60 LERDSNNVEA HIGKGICLQT QSKVNLAFDC FGEAIRLDPH NACALTHCGI LHKEEGRLVE 120 AAESYQRALM ADASYKPAAE CLAVVLTDLG TSLKLAGSTQ EGIQKYYEAL KIDPHYAPAY 180 YNLGVVYSEM MQYDSALGCY EKAALERPMY AEAYCNMGVI YKNRGDLEMA ITCYERCLAV 240 SPNFEIAKNN MAIALTDLGT KVKLEGDVSQ GVAYYKKALY YNWHYADAMY NLGVAYGEML 300 KFDMAIVFYE LAFHFNPHCA EACNNLGVLY KDRDNLDKAV ECYQMALSIK PNFAQSLNNL 360 GVVYTVQGKM DAAADTIEKA ILANPTYAEA FNNLGVLYRD AGNITAAIDA YEECLKIDQD 420 SRNAGQNRLL AMNYINEGLD DKLYEAHRDW GWRFTRLHPQ YTSWDNVKDP ERPITIGYIS 480 PDFFTHSVSY FIEAPLTHHD YTKYRVVVYS AVVKADAKTF RFRDKVLKKG GVWKDIYGID 540 EKKIASMVRD DEIDILVELT GHTANNKLGT MACRPAPVQV TWIGYPNTTG LPTVDYRITD 600 SLADPLDTKQ KQVEELVRLP DCFLCYTPSP EAGPVCPTPA LSNGFVTFGS FNNLAKITPK 660 VLQVWARILC AVPNSRLVVK CKPFCSDSIR QRFLTTLEQL GLESKRVDLL PLILFNHDHM 720 QAYSLMDISL DTFPYAGTTT TCESLYMGVP CVTMAGSVHA HNVGVSLLSN VGLGRLVAKN 780 EDEYVRLSVD LASDVTALSK LRMSLRDLMA GSPVCNGPSF AVALESAYRS MWRSYCKGEV 840 PSLKRMEKLQ KEVQEDPLIS SRLNVTGEAT PSLKANGSAP VPSSLPTQSW QLSKNRDSTS 900 * 960 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam13844 | Glyco_transf_41 | 2.0e-20 | 476 | 623 | 151 | + Glycosyl transferase family 41. This family of glycosyltransferases includes O-linked beta-N-acetylglucosamine (O-GlcNAc) transferase, an enzyme which catalyzes the addition of O-GlcNAc to serine and threonine residues. In addition to its function as an O-GlcNAc transferase, human OGT, also appears to proteolytically cleave the epigenetic cell-cycle regulator HCF-1. | ||
| pfam13844 | Glyco_transf_41 | 3.0e-23 | 646 | 832 | 192 | + Glycosyl transferase family 41. This family of glycosyltransferases includes O-linked beta-N-acetylglucosamine (O-GlcNAc) transferase, an enzyme which catalyzes the addition of O-GlcNAc to serine and threonine residues. In addition to its function as an O-GlcNAc transferase, human OGT, also appears to proteolytically cleave the epigenetic cell-cycle regulator HCF-1. | ||
| TIGR02917 | PEP_TPR_lipo | 3.0e-23 | 38 | 418 | 409 | + putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. | ||
| COG3914 | Spy | 3.0e-92 | 303 | 835 | 562 | + Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005515 | protein binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAX46402.1 | 0 | 5 | 889 | 6 | 909 | putative SPINDLY protein [Rosa luciae] |
| RefSeq | NP_187761.1 | 0 | 1 | 900 | 1 | 914 | SPY (SPINDLY); protein N-acetylglucosaminyltransferase/ protein binding / transferase, transferring glycosyl groups [Arabidopsis thaliana] |
| RefSeq | XP_002281883.1 | 0 | 25 | 889 | 41 | 906 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002323412.1 | 0 | 1 | 886 | 1 | 908 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002530535.1 | 0 | 5 | 889 | 6 | 910 | o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 4gz6_D | 4e-35 | 252 | 624 | 9 | 386 | A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic Module (Bjchi3) |
| PDB | 4gz6_D | 1e-23 | 646 | 841 | 524 | 715 | A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic Module (Bjchi3) |
| PDB | 4gz6_D | 4e-17 | 99 | 255 | 6 | 155 | A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic Module (Bjchi3) |
| PDB | 4gz6_D | 0.00000000000004 | 146 | 293 | 12 | 152 | A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic Module (Bjchi3) |
| PDB | 4gz6_D | 0.000000009 | 41 | 184 | 16 | 152 | A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic Module (Bjchi3) |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DY295408 | 401 | 416 | 813 | 0 |
| HO781209 | 357 | 483 | 839 | 0 |
| HO781209 | 119 | 379 | 497 | 0 |
| HO781209 | 67 | 200 | 264 | 0.00004 |
| HO781209 | 58 | 316 | 371 | 1.5 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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