| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra001504 |
| Family | AA1 |
| Protein Properties | Length: 552 Molecular Weight: 61860.3 Isoelectric Point: 9.2808 |
| Chromosome | Chromosome/Scaffold: 03 Start: 16712983 End: 16715507 |
| Description | SKU5 similar 13 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA1 | 41 | 503 | 0 |
| LGIPQQVILINGQFPGPNLNSTSNNNVVINVFNNLDEPFLLTWSGLQHRKNSWQDGVAGTSCPIPAGTNYTYHFQPKDQIGSYFYYPSTALHRFSGGFGG LRVNSRLLIPVPYADPEDDYTVLINDWYTKSHTALKNFLDSGRTLGSPDGVLINGKSGKVGGQDKPLFTMKPGKTYKYRICNVGFKSTLNFRIQGHKMKL VEMEGSHVLQNDYDSLDVHVGQCFAVLVTADQAAKNYYMVASTRFLKKEVSTVGVMSYEGSTVQPSSELPKAPVGWAWSLNQYRSFRWNLTASAARPNPQ GSYHYGKINITRTIKLANTKSVVNGKVRFGFNGVSHVDTETPLKLAEYFEMSEKVFKYNVIKDEPAAKVTTLTVEPNVLNITFRTFVEIVFENHEKSMQS FHLDGYSFFAVASEPGRWTPEKRKNYNLLDAVSRHTVQVYPNSWSAILLTFDNAGMWNIRSEN | |||
| Full Sequence |
|---|
| Protein Sequence Length: 552 Download |
| MQGGKLLTVF VCLVSTVALV NAGDPYFYYT WNVTYGTASP LGIPQQVILI NGQFPGPNLN 60 STSNNNVVIN VFNNLDEPFL LTWSGLQHRK NSWQDGVAGT SCPIPAGTNY TYHFQPKDQI 120 GSYFYYPSTA LHRFSGGFGG LRVNSRLLIP VPYADPEDDY TVLINDWYTK SHTALKNFLD 180 SGRTLGSPDG VLINGKSGKV GGQDKPLFTM KPGKTYKYRI CNVGFKSTLN FRIQGHKMKL 240 VEMEGSHVLQ NDYDSLDVHV GQCFAVLVTA DQAAKNYYMV ASTRFLKKEV STVGVMSYEG 300 STVQPSSELP KAPVGWAWSL NQYRSFRWNL TASAARPNPQ GSYHYGKINI TRTIKLANTK 360 SVVNGKVRFG FNGVSHVDTE TPLKLAEYFE MSEKVFKYNV IKDEPAAKVT TLTVEPNVLN 420 ITFRTFVEIV FENHEKSMQS FHLDGYSFFA VASEPGRWTP EKRKNYNLLD AVSRHTVQVY 480 PNSWSAILLT FDNAGMWNIR SENWERRYLG QQLYVSVLSP EKSLRDEYNI PLNTNLCGIV 540 KGLPLPTPYT I* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02354 | PLN02354 | 0 | 1 | 551 | 552 | + copper ion binding / oxidoreductase | ||
| PLN02835 | PLN02835 | 0 | 6 | 538 | 534 | + oxidoreductase | ||
| PLN02991 | PLN02991 | 0 | 13 | 542 | 530 | + oxidoreductase | ||
| PLN02792 | PLN02792 | 0 | 14 | 548 | 540 | + oxidoreductase | ||
| PLN02168 | PLN02168 | 0 | 6 | 541 | 553 | + copper ion binding / pectinesterase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005507 | copper ion binding |
| GO:0016491 | oxidoreductase activity |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD10639.1 | 0 | 4 | 550 | 3 | 558 | putative pollen specific protein [Arabidopsis thaliana] |
| EMBL | CAA47177.1 | 0 | 24 | 549 | 25 | 552 | Bplo [Brassica napus] |
| RefSeq | NP_175953.1 | 0 | 1 | 550 | 1 | 553 | sks12 (SKU5 Similar 12); copper ion binding / oxidoreductase [Arabidopsis thaliana] |
| RefSeq | NP_187948.1 | 0 | 1 | 551 | 1 | 551 | sks13 (SKU5 Similar 13); copper ion binding / oxidoreductase [Arabidopsis thaliana] |
| RefSeq | NP_564697.1 | 0 | 4 | 550 | 3 | 549 | sks14 (SKU5 Similar 14); copper ion binding / oxidoreductase [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1asq_B | 0 | 28 | 538 | 5 | 539 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1asq_A | 0 | 28 | 538 | 5 | 539 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1asp_B | 0 | 28 | 538 | 5 | 539 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1asp_A | 0 | 28 | 538 | 5 | 539 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1aso_B | 0 | 28 | 538 | 5 | 539 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
