| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra001546 |
| Family | CE8 |
| Protein Properties | Length: 590 Molecular Weight: 63653.5 Isoelectric Point: 8.6225 |
| Chromosome | Chromosome/Scaffold: 03 Start: 16954410 End: 16956782 |
| Description | pectin methylesterase 1 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 280 | 572 | 0 |
| NVIVAADGSGDVWTVNEAVVKIPKKSNATFVIYVKAGTYVENVVMDKNMRNVMIYGDGKSKTIISGSKNYGIDGIKTYNTATLGVLGSGFIMKDIGIINT AGPEKGQAVAFRSGSDHSVYYQCSFDGYQDTLYPQAKRQFYRDCDVTGTVDFIFGSAAVVFQGCNIRPRQPLPKQYNTITAQGKKEENLHSGTVIQGCTI TANGNVTAATYLGRPWKPYSTTVFMQSEIGALVGAAGWMRWDAGVDPPSTILYGEYKNSGPGAGVTKRVNWAGYKPTMSAAEAGRFTVDAFIN | |||
| Full Sequence |
|---|
| Protein Sequence Length: 590 Download |
| MDTPNSAKGY FKVDDEAQEV ALKKKAYKRL FIVVASVVVF LGIIIGAAVA VARSQKNDPH 60 GSSPSSTPKL TPAASLKSVC SVTRFPDACI SSISKIPSSN TTDPVVIFRL SLKVVVDELA 120 SISDLPKKLA EETDDEGIKS ALRVCDEMLD VAMDSVNDTV SSMEVGDGKN ILNSGKIEDL 180 KTWLTAAITY YETCFDTLAE ISPNQSESKT SIVSKNLTSS MKNSTEFTSN SLAIVAKILS 240 TLSDFGVPVH RRRLLSSNSF PSWVSPRARR LLSAKSIKPN VIVAADGSGD VWTVNEAVVK 300 IPKKSNATFV IYVKAGTYVE NVVMDKNMRN VMIYGDGKSK TIISGSKNYG IDGIKTYNTA 360 TLGVLGSGFI MKDIGIINTA GPEKGQAVAF RSGSDHSVYY QCSFDGYQDT LYPQAKRQFY 420 RDCDVTGTVD FIFGSAAVVF QGCNIRPRQP LPKQYNTITA QGKKEENLHS GTVIQGCTIT 480 ANGNVTAATY LGRPWKPYST TVFMQSEIGA LVGAAGWMRW DAGVDPPSTI LYGEYKNSGP 540 GAGVTKRVNW AGYKPTMSAA EAGRFTVDAF INEEDWLPAM GVPYQPSFF* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02301 | PLN02301 | 7.0e-143 | 66 | 585 | 529 | + pectinesterase/pectinesterase inhibitor | ||
| PLN02745 | PLN02745 | 8.0e-146 | 54 | 583 | 560 | + Putative pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 6.0e-166 | 280 | 571 | 297 | + Pectinesterase. | ||
| PLN02468 | PLN02468 | 1.0e-173 | 8 | 588 | 593 | + putative pectinesterase/pectinesterase inhibitor | ||
| PLN02314 | PLN02314 | 0 | 1 | 587 | 592 | + pectinesterase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM65650.1 | 0 | 1 | 587 | 1 | 586 | pectinesterase, putative [Arabidopsis thaliana] |
| RefSeq | NP_175787.1 | 0 | 1 | 587 | 1 | 586 | ATPME1; pectinesterase [Arabidopsis thaliana] |
| RefSeq | NP_188047.1 | 0 | 1 | 278 | 1 | 272 | ATPMEPCRC; pectinesterase [Arabidopsis thaliana] |
| RefSeq | NP_188047.1 | 0 | 51 | 583 | 431 | 966 | ATPMEPCRC; pectinesterase [Arabidopsis thaliana] |
| RefSeq | XP_002304256.1 | 0 | 1 | 585 | 1 | 585 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1xg2_A | 0 | 277 | 589 | 1 | 316 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1gq8_A | 0 | 274 | 584 | 2 | 315 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 3uw0_A | 2e-19 | 280 | 500 | 32 | 274 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 1qjv_B | 5e-17 | 293 | 580 | 20 | 341 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 5e-17 | 293 | 580 | 20 | 341 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
