| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra001605 |
| Family | GH28 |
| Protein Properties | Length: 453 Molecular Weight: 48324.4 Isoelectric Point: 5.2203 |
| Chromosome | Chromosome/Scaffold: 03 Start: 17345272 End: 17347541 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 46 | 377 | 0 |
| WEAVCSGTGDGQLIVPAGMTFVLQPLKFQGSCKSTPIVVQILGNMVASSRGNWEGDKDQWILFSDIEGLVVEGNGVINGQGSSWWEHKGSSRPTALKFKS CNNLRLSGLTHVDSAKAHIHINNCNGVSISNLRINAPESSPNTDGIDVAASSNVIIQDCVIATGDDCIAINSGTSNIRVCGIDCGPGHGISIGSLGKDGE TASVEDICVQNCNFRGTTNGARIKTWPGGSGYARRITFSGITLDNVENPIIIDQHYNNGGSEKNTDDKSSAVEVSKVVYSNFVGTSKSEYGVDFRCSTAV PCTEIFMKDVRIETPSSGSGQVAQGQCLNVRG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 453 Download |
| MKKTWILNFS VFFLHIFTSS KALDVTQYGA NGDGVTDDSQ AFLKAWEAVC SGTGDGQLIV 60 PAGMTFVLQP LKFQGSCKST PIVVQILGNM VASSRGNWEG DKDQWILFSD IEGLVVEGNG 120 VINGQGSSWW EHKGSSRPTA LKFKSCNNLR LSGLTHVDSA KAHIHINNCN GVSISNLRIN 180 APESSPNTDG IDVAASSNVI IQDCVIATGD DCIAINSGTS NIRVCGIDCG PGHGISIGSL 240 GKDGETASVE DICVQNCNFR GTTNGARIKT WPGGSGYARR ITFSGITLDN VENPIIIDQH 300 YNNGGSEKNT DDKSSAVEVS KVVYSNFVGT SKSEYGVDFR CSTAVPCTEI FMKDVRIETP 360 SSGSGQVAQG QCLNVRGVST LAVPGLECLA LSTDMLSSAE LPEQTCMLPQ PSVQPSTRPM 420 QDPFWVYGSG GKPHRVFDVV LTSFIFVVLY MY* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 6.0e-89 | 3 | 376 | 396 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 1.0e-92 | 23 | 358 | 346 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 1.0e-101 | 19 | 396 | 388 | + Probable polygalacturonase | ||
| PLN03010 | PLN03010 | 2.0e-120 | 6 | 380 | 378 | + polygalacturonase | ||
| PLN03003 | PLN03003 | 0 | 1 | 451 | 454 | + Probable polygalacturonase At3g15720 | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABC75354.1 | 0 | 1 | 389 | 1 | 394 | Glycoside hydrolase, family 28 [Medicago truncatula] |
| RefSeq | NP_001078162.1 | 0 | 1 | 451 | 1 | 449 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_195292.2 | 0 | 6 | 380 | 4 | 379 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_566524.1 | 0 | 2 | 451 | 3 | 453 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002515526.1 | 0 | 23 | 390 | 28 | 393 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 6e-25 | 116 | 362 | 113 | 366 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 2iq7_G | 9e-25 | 38 | 304 | 7 | 269 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 9e-25 | 38 | 304 | 7 | 269 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 9e-25 | 38 | 304 | 7 | 269 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 9e-25 | 38 | 304 | 7 | 269 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
