| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra001642 |
| Family | GH28 |
| Protein Properties | Length: 452 Molecular Weight: 48943.1 Isoelectric Point: 5.8516 |
| Chromosome | Chromosome/Scaffold: 03 Start: 17650192 End: 17652416 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 74 | 411 | 0 |
| KGGAQLYVPPGKWLTGSFNLTSHLTLFLEKGATILASPDQSHWDTVSSLPSYGRGKRYRSLINGDNLLDVVITGDNGTFDGQGAVWWEWFESGTLNYSRP HIIELVSSKNILISNLTFLNAPSVNIHPVYCSHVHIRKVLIETTVDSPYVLGVVPDSSDNVCIEDSTINVGHDTISLKSGWDQYGINYNRPTTNVHLRNL SLKSPTGAGISFGSEMSGGISDVTVELLTIQSSHVGVAFRTTRGRGGYIRNITISDVILSRVDTAIVADGHTGSHADDKYDRDALPVVTRVLMRNFTGEG IGLAGKFTGIGESPFTSICLSDIHLQTSSESWVCSNVS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 452 Download |
| MKIPVALVWL LAFTNVLLIR GESNDATICK DHFMLDPRPH SVSILEFGAV GDGKYLNTLA 60 FQNAIFYLKS FADKGGAQLY VPPGKWLTGS FNLTSHLTLF LEKGATILAS PDQSHWDTVS 120 SLPSYGRGKR YRSLINGDNL LDVVITGDNG TFDGQGAVWW EWFESGTLNY SRPHIIELVS 180 SKNILISNLT FLNAPSVNIH PVYCSHVHIR KVLIETTVDS PYVLGVVPDS SDNVCIEDST 240 INVGHDTISL KSGWDQYGIN YNRPTTNVHL RNLSLKSPTG AGISFGSEMS GGISDVTVEL 300 LTIQSSHVGV AFRTTRGRGG YIRNITISDV ILSRVDTAIV ADGHTGSHAD DKYDRDALPV 360 VTRVLMRNFT GEGIGLAGKF TGIGESPFTS ICLSDIHLQT SSESWVCSNV SGFSDDVTPE 420 PCQELMSSPS SCFAGGGIYG VDTAARGYYS W* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 6.0e-15 | 43 | 342 | 311 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-20 | 135 | 342 | 215 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 2.0e-23 | 39 | 371 | 354 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 1.0e-27 | 40 | 419 | 400 | + Probable polygalacturonase At3g15720 | ||
| COG5434 | PGU1 | 5.0e-51 | 42 | 352 | 340 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM62920.1 | 0 | 3 | 451 | 1 | 453 | polygalacturonase, putative [Arabidopsis thaliana] |
| DDBJ | BAA95779.1 | 0 | 3 | 451 | 1 | 453 | polygalacturonase-like protein [Arabidopsis thaliana] |
| EMBL | CBI22951.1 | 0 | 29 | 422 | 26 | 427 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_188308.1 | 0 | 1 | 451 | 1 | 455 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002273305.1 | 0 | 29 | 422 | 28 | 429 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 3e-32 | 40 | 395 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 3e-32 | 40 | 395 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 3e-32 | 40 | 395 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 3e-32 | 40 | 395 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 0.000000000000003 | 86 | 411 | 52 | 373 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
