| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra001652 |
| Family | CE8 |
| Protein Properties | Length: 345 Molecular Weight: 38384.4 Isoelectric Point: 8.3056 |
| Chromosome | Chromosome/Scaffold: 03 Start: 17694400 End: 17695825 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 46 | 332 | 0 |
| IIVDIEGKGDYTSVQKAIDAVPVGNSNWIIVHVRKGIYKERVHIPENKPFIFMRGNGRGKTVIESSQSAVDNVASATFKVEANHFVAFGISIRNDAPVGL AFTSDNQSVAAFVAADKVAFYHCAFYSLHNTLFDNKGRHYYHECYIQGSIDFIFGRATSIFNNCEIFVISDKRVKPYGSITAHHRESAEEHTGYVFIRGK VYGIDEVYLGRAKGPYSRVIFAKTYLSKTVVPSGWTNWSYDGSTKDIYHAEYKCHGPGAERQGRSDWAKELTKQEVESFLSIDFIDG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 345 Download |
| MDHRAGMILA LTLVAMSVWG SDASAVQTTK FGAPLLTEKI ATNRSIIVDI EGKGDYTSVQ 60 KAIDAVPVGN SNWIIVHVRK GIYKERVHIP ENKPFIFMRG NGRGKTVIES SQSAVDNVAS 120 ATFKVEANHF VAFGISIRND APVGLAFTSD NQSVAAFVAA DKVAFYHCAF YSLHNTLFDN 180 KGRHYYHECY IQGSIDFIFG RATSIFNNCE IFVISDKRVK PYGSITAHHR ESAEEHTGYV 240 FIRGKVYGID EVYLGRAKGP YSRVIFAKTY LSKTVVPSGW TNWSYDGSTK DIYHAEYKCH 300 GPGAERQGRS DWAKELTKQE VESFLSIDFI DGTSWLPVWL HQNS* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02665 | PLN02665 | 7.0e-78 | 34 | 336 | 306 | + pectinesterase family protein | ||
| PLN02497 | PLN02497 | 2.0e-79 | 44 | 336 | 307 | + probable pectinesterase | ||
| PLN02432 | PLN02432 | 3.0e-82 | 46 | 336 | 291 | + putative pectinesterase | ||
| PLN02682 | PLN02682 | 1.0e-90 | 39 | 337 | 309 | + pectinesterase family protein | ||
| PLN02480 | PLN02480 | 0 | 3 | 340 | 338 | + Probable pectinesterase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACU23222.1 | 0 | 7 | 340 | 20 | 346 | unknown [Glycine max] |
| RefSeq | NP_188331.1 | 0 | 1 | 342 | 1 | 342 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002272939.1 | 0 | 8 | 340 | 11 | 348 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002311381.1 | 0 | 11 | 339 | 14 | 341 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002523016.1 | 0 | 29 | 340 | 40 | 350 | Pectinesterase-2 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 4.99983e-42 | 45 | 336 | 8 | 308 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 2e-36 | 47 | 336 | 6 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3uw0_A | 5e-18 | 41 | 331 | 28 | 360 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_B | 2e-17 | 56 | 211 | 18 | 190 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_A | 2e-17 | 56 | 211 | 18 | 190 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
